View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16561_low_84 (Length: 324)
Name: NF16561_low_84
Description: NF16561
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16561_low_84 |
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Alignment Details
Target: chr1 (Bit Score: 254; Significance: 1e-141; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 1 - 307
Target Start/End: Complemental strand, 36753101 - 36752796
Alignment:
| Q |
1 |
gctgaaataaaaacgagcaagacaaaaatattagttataatatattactttgtttaagtttcttaatgagtttaattatagttgatttcactatgcaaat |
100 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||| |
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| T |
36753101 |
gctgaaataaaaacgagcaagacaaaaagattagttataatatattactttgtttaagtttcttaatgagttcaattatagttgatttcactatccaaat |
36753002 |
T |
|
| Q |
101 |
gcaagtacttatttttgtcccttctttatctaaccttcagaaccaaatgaaaattattaaaaacaaaccaaaactaatggtacacataatagaaaattac |
200 |
Q |
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| T |
36753001 |
gcaagtacttatttttgtcccttctttatctaaccttcagaaccaaatgaaaaatattaaaaacaaaccaaaactaatggtacacataatagaaaattac |
36752902 |
T |
|
| Q |
201 |
tgcgtnnnnnnnncatgcacacgtttaagaattgacttccgccaatttgagttatgcatgtgacttcagggcattattattggaagtgtctggtggaaat |
300 |
Q |
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| ||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36752901 |
tacgt-aaaaaaacatgcacacgtttaagaattgacttctgccaatttgagttatgcatgtgacttcagggcattattattggaagtgtctggtggaaat |
36752803 |
T |
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| Q |
301 |
gctgaat |
307 |
Q |
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||||||| |
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| T |
36752802 |
gctgaat |
36752796 |
T |
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