View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16561_low_86 (Length: 322)
Name: NF16561_low_86
Description: NF16561
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16561_low_86 |
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Alignment Details
Target: chr6 (Bit Score: 241; Significance: 1e-133; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 7 - 314
Target Start/End: Complemental strand, 17970101 - 17969793
Alignment:
| Q |
7 |
tatatgttttagtttaacttgagagagtgtgaaaaaagagtagcttagcctgtataaggtaaatgaccgaatagttatggaaattcataaattgtaactt |
106 |
Q |
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| T |
17970101 |
tatatgttttagtttaacttgagagagtgtctaaaaagaatagcttagcctgtataaggtaaatgaccgaatagttatggaaattcaaaaattgtaactt |
17970002 |
T |
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| Q |
107 |
ttacacccgagtgaaaattgtaaaggtaatgtttgctgnnnnnnnnct-ctcttaaaatcttatataatttatgcttttccctcttttcacacatttgta |
205 |
Q |
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| T |
17970001 |
ttacacccgagtgaaaattgtaaaggtaatgtttgctgtttttttttttctcttaaaatcttatataatttatgcttttccctcttttcacacatttgta |
17969902 |
T |
|
| Q |
206 |
taatagtaattttatacctgtacagttatacctatgttaaagaacattactttgaaaagaacattctactttttgcatataagttttcatgtctgatcct |
305 |
Q |
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| T |
17969901 |
taatagtaattatatacctgtacagttatacctatgttaaagaacattacttggaaacgaacattctactttttgcatataagttttcttgtctgatcct |
17969802 |
T |
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| Q |
306 |
attcatctc |
314 |
Q |
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| T |
17969801 |
attcatctc |
17969793 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 80 - 205
Target Start/End: Complemental strand, 17922811 - 17922683
Alignment:
| Q |
80 |
gttatggaaattcataaattgtaacttttacacccgagtgaaaattgt-----aaaggtaatgtttgctgnnnnnnnnctctcttaaaatcttatataat |
174 |
Q |
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| T |
17922811 |
gttatggaaattcataaattataacttttacacccgagtgtaaattgtaaagtaaagataatgtttgctggtttttt--tcttttaatatcttgtataat |
17922714 |
T |
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| Q |
175 |
ttatgcttttccctcttttcacacatttgta |
205 |
Q |
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| T |
17922713 |
ttatgctttttcctcttttcactcatttgta |
17922683 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 83 - 138
Target Start/End: Complemental strand, 32356934 - 32356879
Alignment:
| Q |
83 |
atggaaattcataaattgtaacttttacacccgagtgaaaattgtaaaggtaatgt |
138 |
Q |
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||||||||||| ||||||||||||||||||| ||||| ||||| | |||| ||||| |
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| T |
32356934 |
atggaaattcacaaattgtaacttttacaccagagtgtaaattatgaaggaaatgt |
32356879 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 163 - 205
Target Start/End: Complemental strand, 33581425 - 33581383
Alignment:
| Q |
163 |
atcttatataatttatgcttttccctcttttcacacatttgta |
205 |
Q |
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| T |
33581425 |
atcttataccatttatgcttttccctcttttcacatatttgta |
33581383 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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