View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16561_low_87 (Length: 321)

Name: NF16561_low_87
Description: NF16561
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16561_low_87
NF16561_low_87
[»] chr4 (1 HSPs)
chr4 (24-305)||(38436420-38436715)


Alignment Details
Target: chr4 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 24 - 305
Target Start/End: Original strand, 38436420 - 38436715
Alignment:
Q  24 ctctttcatggtcttaaacataaacaaaaagacatgggggagtatattatttttcctttacaacatcgcctcttgtattaatgcatttgttttttggtat 123  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38436420 ctctttcatggtcttaaacataaacaaaaagacatgggggagtatattatttttcctttacaacatcgcctcttgtattaatgcatttgttttttggtat 38436519  T
Q  124 gcacattgttatccatgttttttcacaacttgtgtaataatttgatgatgtttgactaactttatggttcac--------------ttgcaatgtgctta 209  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||              ||||||||||||||    
T  38436520 gcacattgctatccatgttttttcacaacttgtgtaataatttgatgatgtttgactaactttatggttcacgatcgatataggttttgcaatgtgctta 38436619  T
Q  210 aattttatcaaacatcaaattgagaggttttagtgaacttatgatgcatcgcctatatatgatttcactatctccttcttaacctccacttcacca 305  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38436620 aattttatcaaacatcaaattgtgaggttttagtgaacttatgatgcatcgcctatatatgatttcactatctccttcttaacctccacttcacca 38436715  T

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