View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16561_low_88 (Length: 318)
Name: NF16561_low_88
Description: NF16561
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16561_low_88 |
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Alignment Details
Target: chr5 (Bit Score: 271; Significance: 1e-151; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 18 - 296
Target Start/End: Complemental strand, 25924231 - 25923953
Alignment:
| Q |
18 |
tcatcaggctatcccggtagaacctaccgtttctacacaggtccaaaggtctacgaattcggctatggtctaagctactcaaattattcctacaacttta |
117 |
Q |
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| T |
25924231 |
tcatcaggctatcccggtagaacctaccgtttctacacaggtccaaaggtctacgaattcggctatggtctaagctactcaaattattcctacaacttta |
25924132 |
T |
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| Q |
118 |
tttccgtcaaaaacaacaaccttcacatcaaccaatcaaccactcattcaatactcgaaaactctgaaacaatctattacaaacttgtttcagagttagg |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25924131 |
tttccgtcaaaaacaacaaccttcacatcaaccaatcaaccactcattcgatactcgaaaactctgaaacaatctattacaaacttgtttcagagttagg |
25924032 |
T |
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| Q |
218 |
tgaagaaacatgtcaaaccatgtcaatttctgtcacattgggaattacaaatactggaagcatggctgggaaacatcct |
296 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25924031 |
tgaagaaacatgtaaaaccatgtcaatttctgtcacattgggaattacaaatactggaagcatggctgggaaacatcct |
25923953 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 16 - 296
Target Start/End: Complemental strand, 25905390 - 25905110
Alignment:
| Q |
16 |
catcatcaggctatcccggtagaacctaccgtttctacacaggtccaaaggtctacgaattcggctatggtctaagctactcaaattattcctacaactt |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
25905390 |
catcatcaggctatcccggtagaacctaccgtttctacacaggtccaaaggtctacgaattcggctatggcctaagctactcaaattattcctacaactt |
25905291 |
T |
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| Q |
116 |
tatttccgtcaaaaacaacaaccttcacatcaaccaatcaaccactcattcaatactcgaaaactctgaaacaatctattacaaacttgtttcagagtta |
215 |
Q |
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| T |
25905290 |
catttccgtcaaaaataacaaccttcacatcaaccaatcaaccacttattcaatactcgaaaactctgaaacaatcaattacaaacttgtttcagagtta |
25905191 |
T |
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| Q |
216 |
ggtgaagaaacatgtcaaaccatgtcaatttctgtcacattgggaattacaaatactggaagcatggctgggaaacatcct |
296 |
Q |
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|| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
25905190 |
ggcgaagaaacatgtaaaaccatgtcaatttctgtcacattgggaattacaaatactggaagcatggctgggaagcatcct |
25905110 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 16 - 296
Target Start/End: Complemental strand, 25884056 - 25883776
Alignment:
| Q |
16 |
catcatcaggctatcccggtagaacctaccgtttctacacaggtccaaaggtctacgaattcggctatggtctaagctactcaaattattcctacaactt |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
25884056 |
catcatcaggctatcccggtagaacctaccgtttctacacaggtccaaaggtctacgaattcggctatggcctaagctactcaaattattcctacaactt |
25883957 |
T |
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| Q |
116 |
tatttccgtcaaaaacaacaaccttcacatcaaccaatcaaccactcattcaatactcgaaaactctgaaacaatctattacaaacttgtttcagagtta |
215 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||| |||||| |
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| T |
25883956 |
catttccgtcaaaaacaacaacattcacatcaaccaatcaaccactcattcgatactcgaaaactctgaaacaatccgttacaaacttgtttcggagtta |
25883857 |
T |
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| Q |
216 |
ggtgaagaaa-catgtcaaaccatgtcaatttctgtcacattgggaattacaaatactggaagcatggctgggaaacatcct |
296 |
Q |
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|| ||||||| ||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25883856 |
gg-gaagaaagcatgtaaaaccatgtcaatttctgtaacattgggaattacaaatactggaagcatggctgggaaacatcct |
25883776 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 16 - 296
Target Start/End: Original strand, 25961036 - 25961316
Alignment:
| Q |
16 |
catcatcaggctatcccggtagaacctaccgtttctacacaggtccaaaggtctacgaattcggctatggtctaagctactcaaattattcctacaactt |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25961036 |
catcatcaggctatcccggtagaacctaccgtttctacacaggtccaaaggtctacgaattcggctatggtctaagctactcaaattattcctacaactt |
25961135 |
T |
|
| Q |
116 |
tatttccgtcaaaaacaacaaccttcacatcaaccaatcaaccactcattcaatactcgaaaactctgaaacaatctattacaaacttgtttcagagtta |
215 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||| ||| |||||||| |||||||||||||||| |||||| |
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| T |
25961136 |
catttccgtcaaaaataacaaccttcacatcaaccaatcaaccacttattcaatactcgaaaaatctcaaacaatccattacaaacttgtttcggagtta |
25961235 |
T |
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| Q |
216 |
ggtgaagaaa-catgtcaaaccatgtcaatttctgtcacattgggaattacaaatactggaagcatggctgggaaacatcct |
296 |
Q |
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|| ||||||| ||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25961236 |
gg-gaagaaagcatgtaaaaccatgtcaatttctgtaacattgggaattacaaatactggaagcatggctgggaaacatcct |
25961316 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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