View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16561_low_89 (Length: 313)
Name: NF16561_low_89
Description: NF16561
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16561_low_89 |
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Alignment Details
Target: chr8 (Bit Score: 264; Significance: 1e-147; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 18 - 301
Target Start/End: Complemental strand, 39675012 - 39674729
Alignment:
| Q |
18 |
cacatcagacaatattcagcctaaaacataatattaaaacctatatgtgatgttaatgggctaaccatattatttaggcatcaaacccgatagtattgag |
117 |
Q |
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| T |
39675012 |
cacatcagacaatattcagcctaaaacataatattaaaacctatatgtgatgttaatgggctaaccatattatttacgcatcaaacccggtagtattgag |
39674913 |
T |
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| Q |
118 |
cttgagagtgtattggagaaaaagaaaactcgactcacacatttgaatgttaaataatatttgcaaagcctaaataataatcaccttaattacaaattgg |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||| |
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| T |
39674912 |
cttgagagtgtattggagaaaaagaaaactcgactcacacatttgaatgttaaataatatttgcaaagcctaaataatcatcaccttaattagaaattgg |
39674813 |
T |
|
| Q |
218 |
ttttataggattgagttaagtttgtactaccacaatatccctgcaagtcattttgatagtttttcacttatattatgtgagaat |
301 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
39674812 |
ttttataggattgagttaagtttgtactaccacaatatccctgtaagtcattttgatagtttttcacttatattatgtgagaat |
39674729 |
T |
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