View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16561_low_94 (Length: 301)
Name: NF16561_low_94
Description: NF16561
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16561_low_94 |
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Alignment Details
Target: chr7 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 54 - 285
Target Start/End: Original strand, 42808523 - 42808754
Alignment:
| Q |
54 |
aatatcttaacacagtgatagtaaccgtgccnnnnnnnttggaaatcatcattgcacattattgcattttcaacgtgaattatatccatttaatagaaaa |
153 |
Q |
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| T |
42808523 |
aatatcttaacacagtgatagtaaccgtgccaaaaaaattggaaatcatcattgcacattattgcattttcaacgtgaattatatccatttaatagaaaa |
42808622 |
T |
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| Q |
154 |
ttaatgtgagggtcacaagttttattgctgcaaactagaaaaaagaagtaaaaattgaaatataagtggtttaaggtttccttgacagttaattgccgaa |
253 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| | ||||||||||| ||| |
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| T |
42808623 |
ttaatgtgagggtcacaagttttattgctgcaaactagaaaaaagaagtaaaaattgaaatattagtggtttaaggtttcctcggcagttaattgctgaa |
42808722 |
T |
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| Q |
254 |
gtttgtctggcagttaattgcagccggttttc |
285 |
Q |
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| T |
42808723 |
gtttgtctggcagttaactgcagtcggttttc |
42808754 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 170; Significance: 3e-91; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 54 - 285
Target Start/End: Original strand, 33051471 - 33051704
Alignment:
| Q |
54 |
aatatcttaacacagtgatagtaaccgtgccnnnnnnnttggaaatcatcattgcacattattgcattttcaacgtgaattatatccatttaatagaaaa |
153 |
Q |
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| T |
33051471 |
aatatcttaacacagagatagtaaccgtgccaaaaaaattggaaataatcattgcacattaatgcattttcaacgtgaattatatccatttaatagaaaa |
33051570 |
T |
|
| Q |
154 |
ttaatgtgagggtcacaagttttattgctgcaaactagaaaaaagaagtaaaaattgaaatataagtggtttaaggtttccttgacagttaattgccgaa |
253 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| | ||||||||||||||| |
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| T |
33051571 |
ttaatgtgagggtcacaagttttattgctgcaaactagaaaaaagaagtaaaaattgaaatattagtggtttaaggtttcctcggcagttaattgccgaa |
33051670 |
T |
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| Q |
254 |
gtttgtct--ggcagttaattgcagccggttttc |
285 |
Q |
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|||| ||| ||||||||| |||||||||||||| |
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| T |
33051671 |
gtttttcttcggcagttaactgcagccggttttc |
33051704 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 145 - 194
Target Start/End: Original strand, 35389384 - 35389433
Alignment:
| Q |
145 |
aatagaaaattaatgtgagggtcacaagttttattgctgcaaactagaaa |
194 |
Q |
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| T |
35389384 |
aatagaaaattaatttgaggttcaccagttttaatgctgcaaactagaaa |
35389433 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 221 - 283
Target Start/End: Original strand, 10492859 - 10492922
Alignment:
| Q |
221 |
ggtttaaggtttccttgacagttaattgccgaagtttgtct-ggcagttaattgcagccggttt |
283 |
Q |
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||||| ||||||||| | ||||||| ||||||||||| || |||||||||||||||||||||| |
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| T |
10492859 |
ggtttgaggtttcctcggcagttaactgccgaagttttcctcggcagttaattgcagccggttt |
10492922 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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