View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16561_low_95 (Length: 298)
Name: NF16561_low_95
Description: NF16561
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16561_low_95 |
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Alignment Details
Target: chr4 (Bit Score: 180; Significance: 3e-97; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 19 - 284
Target Start/End: Complemental strand, 37777080 - 37776813
Alignment:
| Q |
19 |
ttcttagtgtaaattatagttatattttattggatattgtttgttagtctactacctatattataggatagttggtttgggttctccttgggctcccttt |
118 |
Q |
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| T |
37777080 |
ttcttaatgtaaattatagttatattttattggatattgtttgttagtctactacctatattataggatagttactttgggttctccttgagttcccttt |
37776981 |
T |
|
| Q |
119 |
gtacatattcatattggggtatctttcctgatatagattgtaatatacattcttt-gttttaatgaataaccatgaggaatatt-agtttaatctctctt |
216 |
Q |
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||| ||||| | ||||||||||||| ||||||||||||||||||||||||||||| | |||||||| |||||||||||||| ||||||||||||||| |
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| T |
37776980 |
gtatatatttacattggggtatcttccctgatatagattgtaatatacattctttcaatccaatgaatacccatgaggaatattcagtttaatctctctt |
37776881 |
T |
|
| Q |
217 |
tgttttttaattccttaattcaatatcattcaagagaagcctagacatttgatcgctaacaagatctt |
284 |
Q |
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| T |
37776880 |
tatttcttaattccttaattcaatatcattcaagagaagcctagacatttgaccgctaacaatatctt |
37776813 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 145; Significance: 2e-76; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 19 - 241
Target Start/End: Original strand, 36855972 - 36856196
Alignment:
| Q |
19 |
ttcttagtgtaaattatagttatattttattggatattgtttgttagtctactacctatattataggatagttggtttgggttctccttgggctcccttt |
118 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||| | ||||| |
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| T |
36855972 |
ttcttaatgtaaattatagttatattttattggatattgtttgttagtctactacctatattataggatagttaatttgggttctccctgggtttccttt |
36856071 |
T |
|
| Q |
119 |
gtacatattcatattggggtatctttcctgatatagattgtaatatacattcttt-gttttaatgaataaccatgaggaatatt-agtttaatctctctt |
216 |
Q |
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| T |
36856072 |
gtatatattcacattggggtatcttccctgatatagattgtaatatacattctttcaatccaatgaatacccatgaggaatattgagcttaatctctctt |
36856171 |
T |
|
| Q |
217 |
tgttttttaattccttaattcaata |
241 |
Q |
| |
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||||| ||||||||||||||||||| |
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| T |
36856172 |
tgtttcttaattccttaattcaata |
36856196 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 179 - 229
Target Start/End: Complemental strand, 7427042 - 7426991
Alignment:
| Q |
179 |
aatgaataaccatgaggaatatt-agtttaatctctctttgttttttaattc |
229 |
Q |
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|||||||| |||||||||||||| |||||||||||||||||||| ||||||| |
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| T |
7427042 |
aatgaatatccatgaggaatattcagtttaatctctctttgtttcttaattc |
7426991 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 125; Significance: 2e-64; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 19 - 241
Target Start/End: Complemental strand, 43023839 - 43023617
Alignment:
| Q |
19 |
ttcttagtgtaaattatagttatattttattggatattgtttgttagtctactacctatattataggatagttggtttgggttctccttgggctcccttt |
118 |
Q |
| |
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|||||| |||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||| | ||||||| |
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| T |
43023839 |
ttcttaatgtaaattat-gttatattttattggatattgtttgttagtctacttcctatattataggatagttagtttgggttctccttgagttcccttt |
43023741 |
T |
|
| Q |
119 |
gtacatattcatattggggtatctttcctgatatagattgtaatatacattcttt-gttttaatgaataaccatgaggaatatt-agtttaatctctctt |
216 |
Q |
| |
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||| ||||||| ||||||||||||| ||| ||||||||||||||||||||||||| || |||||||| |||||| |||||| ||||||||||||||| |
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| T |
43023740 |
gtatatattcacattggggtatcttccctaatatagattgtaatatacattctttcaattcaatgaatacccatga-caatattcagtttaatctctctt |
43023642 |
T |
|
| Q |
217 |
tgttttttaattccttaattcaata |
241 |
Q |
| |
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||||| ||||||| | ||||||||| |
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|
| T |
43023641 |
tgtttcttaattcgtcaattcaata |
43023617 |
T |
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