View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16561_low_98 (Length: 293)
Name: NF16561_low_98
Description: NF16561
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16561_low_98 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 48077825 - 48077610
Alignment:
| Q |
1 |
taaattatgcaagtagttgtaaattttctacgtacgtgtttgaattgtagaactctcctcatgaaaatgtactaatgttaatgttaatgtataagcacat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
48077825 |
taaattatgcaagtagttgtaaattttctacgtacgtgtttgaattgtagaactctcctcatgaaaatgtactaatgttaatgt------ataagcacat |
48077732 |
T |
|
| Q |
101 |
acatgtcttcgctatttctcataatgtggtgaagagtttgatatgtaaaacactattcataccgtaaaacctaagttatttctcagtactagtagtacat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48077731 |
acatgtcttcgctatttctcataatgtggtgaagagtttgatatgtaaaacactattcataccgtaaaacctaagttatttctcagtactagtagtacat |
48077632 |
T |
|
| Q |
201 |
aacttattagcttcacttcacc |
222 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
48077631 |
aacttattagcttcacttcacc |
48077610 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University