View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16562_high_11 (Length: 288)
Name: NF16562_high_11
Description: NF16562
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16562_high_11 |
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Alignment Details
Target: chr5 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 17 - 269
Target Start/End: Original strand, 13663430 - 13663681
Alignment:
| Q |
17 |
aatccatgtatatctcgttaagttggtagccccaccttgaattttgattaacaaaaccagtcaaaaactaggcagtgaagttggatatcttttgttggtt |
116 |
Q |
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| T |
13663430 |
aatccatgtatatctcgttaagttggtagccccaccttgaattttgattaacaaaaccagtcaaaaactaggcagtgaagttggatatcttt-gttggtt |
13663528 |
T |
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| Q |
117 |
cagtttgaagttgcacttttattgaaccatattacaataaaatttacggtccccacatatcgttatgttatgccactaatttggcttatgctttaattac |
216 |
Q |
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| T |
13663529 |
cagtttgaagttgcacttttattgaaccatattactataaaatttacggtccccacatatcgttatgttatgccactaatttgacttatgctttaattac |
13663628 |
T |
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| Q |
217 |
atcaatagaatttagttaagccaacttccctaaccaaagtgacatgggtgact |
269 |
Q |
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| T |
13663629 |
atcaatagaatttagttaagccaacttccctaaccaaagtgacatgggtgact |
13663681 |
T |
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