View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16562_high_12 (Length: 287)
Name: NF16562_high_12
Description: NF16562
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16562_high_12 |
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Alignment Details
Target: chr6 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 16 - 273
Target Start/End: Original strand, 980201 - 980458
Alignment:
| Q |
16 |
atgacattgaaaattgaaacttaggtcacacagagaaaaatcttggtcgaatacctttaaacagacatctggtccgaactttctagaaggggatatccca |
115 |
Q |
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| T |
980201 |
atgacattgaaaattgaaacataggtcacacaaagaaaaatcttggtcgaatacctttaaacagacatctggtccgaactttctagaaggggatatccca |
980300 |
T |
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| Q |
116 |
attcccaaacctcgaacacgacccgagcgctcaggtccaaatacttttccaattgcatcatatggattagcatacattgttgaaaaggcactagactcag |
215 |
Q |
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| T |
980301 |
attcccaaacctcgaacacgacccgagcgctcaggtccaaatacttttccaattgcatcgtatggattagcatacattgttgaaaaggcactagactcag |
980400 |
T |
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| Q |
216 |
ctgcggatttttgatcttcgggcaagtgatttaaaactttagcctagaagtggaaagt |
273 |
Q |
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| T |
980401 |
ctgcggatttttgatcttcgggcaagtgatttaaaactttagcctagaagtggaaagt |
980458 |
T |
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Back To:
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Target: chr8 (Bit Score: 140; Significance: 2e-73; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 126 - 273
Target Start/End: Original strand, 27146425 - 27146572
Alignment:
| Q |
126 |
ctcgaacacgacccgagcgctcaggtccaaatacttttccaattgcatcatatggattagcatacattgttgaaaaggcactagactcagctgcggattt |
225 |
Q |
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| T |
27146425 |
ctcgaacacgacccgagcgctcaggtccaaatacttttccaattgcatcgtatggattagcatacattgttgaaaaggcactagactcaactgcggattt |
27146524 |
T |
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| Q |
226 |
ttgatcttcgggcaagtgatttaaaactttagcctagaagtggaaagt |
273 |
Q |
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| T |
27146525 |
ttgatcttcgggcaagtgatttaaaactttagcctagaagtggaaagt |
27146572 |
T |
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