View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16562_high_17 (Length: 253)
Name: NF16562_high_17
Description: NF16562
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16562_high_17 |
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Alignment Details
Target: chr6 (Bit Score: 64; Significance: 4e-28; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 18 - 81
Target Start/End: Complemental strand, 969681 - 969618
Alignment:
| Q |
18 |
tctcaagcacaaagttttcttccttatagaacttttctcatggtgtgcttacttatataacaag |
81 |
Q |
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| T |
969681 |
tctcaagcacaaagttttcttccttatagaacttttctcatggtgtgcttacttatataacaag |
969618 |
T |
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Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 204 - 243
Target Start/End: Complemental strand, 969467 - 969428
Alignment:
| Q |
204 |
gatctagtagttaggtaggtagagcacatgcaccatataa |
243 |
Q |
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| T |
969467 |
gatctagttgttaggtaggtagagcacatgcaccatataa |
969428 |
T |
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