View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16562_high_19 (Length: 247)

Name: NF16562_high_19
Description: NF16562
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16562_high_19
NF16562_high_19
[»] scaffold0272 (1 HSPs)
scaffold0272 (6-247)||(823-1064)
[»] scaffold0076 (1 HSPs)
scaffold0076 (6-83)||(11835-11913)
[»] chr4 (2 HSPs)
chr4 (102-177)||(50435167-50435242)
chr4 (102-177)||(29081466-29081541)
[»] chr6 (2 HSPs)
chr6 (110-247)||(15841946-15842083)
chr6 (44-88)||(21220694-21220738)
[»] chr1 (1 HSPs)
chr1 (102-166)||(10237916-10237980)
[»] chr8 (1 HSPs)
chr8 (122-166)||(25660324-25660368)
[»] chr7 (1 HSPs)
chr7 (122-177)||(41448549-41448604)
[»] chr5 (1 HSPs)
chr5 (104-177)||(16648793-16648866)
[»] chr3 (1 HSPs)
chr3 (104-177)||(28518690-28518763)


Alignment Details
Target: scaffold0272 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: scaffold0272
Description:

Target: scaffold0272; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 6 - 247
Target Start/End: Original strand, 823 - 1064
Alignment:
Q  6 gagatgaacaattccccatgctgattatatagtatctagtagagaaggtgaatgacaaacctctcaaaaaagtttttgaatttcattgttttatatagca 105  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  823 gagatgaacaattccccatgctgattatatagtatctagtagagaaggtgaatgacaaacctctcaaaaaagtttttgaatttcattgttttatatagca 922  T
Q  106 aggagatccgcttgcgccttttttgttccttgtggttgcggaagggtttagtgggttgatgtgtaatgcggtaaacttacatttatttgaaggcttccgg 205  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  923 aggagatccgcttgcgccttttttgttccttgtggttgcggaagggtttagtgggttgatgtgtaatgcggtaaacttacatttatttgaaggcttccgg 1022  T
Q  206 tttcctgaggagggtttggagatatcccatcttcaatatgcc 247  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  1023 tttcctgaggagggtttggagatatcccatcttcaatatgcc 1064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0076 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0076
Description:

Target: scaffold0076; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 6 - 83
Target Start/End: Complemental strand, 11913 - 11835
Alignment:
Q  6 gagatgaacaattccccatgctgattatata-gtatctagtagagaaggtgaatgacaaacctctcaaaaaagtttttg 83  Q
    ||||| |||||||||||||||| |||||||| ||||||| |||| ||||||||  ||||||| ||||||||||||||||    
T  11913 gagataaacaattccccatgcttattatatatgtatctattagataaggtgaaaaacaaaccactcaaaaaagtttttg 11835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 102 - 177
Target Start/End: Original strand, 50435167 - 50435242
Alignment:
Q  102 agcaaggagatccgcttgcgccttttttgttccttgtggttgcggaagggtttagtgggttgatgtgtaatgcggt 177  Q
    ||||||| ||||||||||| ||||||||||||||| |||| || ||||| |||||||| |||||||  ||||||||    
T  50435167 agcaaggggatccgcttgcaccttttttgttccttttggtggccgaaggttttagtggtttgatgtcaaatgcggt 50435242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 102 - 177
Target Start/End: Original strand, 29081466 - 29081541
Alignment:
Q  102 agcaaggagatccgcttgcgccttttttgttccttgtggttgcggaagggtttagtgggttgatgtgtaatgcggt 177  Q
    |||||||||| || ||||| ||||||||||||||||| || ||| |||| |||||||| |||||| | ||||||||    
T  29081466 agcaaggagacccacttgctccttttttgttccttgttgtagcgaaaggatttagtggattgatgaggaatgcggt 29081541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 110 - 247
Target Start/End: Original strand, 15841946 - 15842083
Alignment:
Q  110 gatccgcttgcgccttttttgttccttgtggttgcggaagggtttagtgggttgatgtgtaatgcggtaaacttacatttatttgaaggcttccggtttc 209  Q
    |||||||| || || |||||||| |||||||||||||| || ||||| |||||||||||||||| |||    ||| |||| | |||| | ||||| |||     
T  15841946 gatccgctcgcaccctttttgtttcttgtggttgcggagggttttagcgggttgatgtgtaatgtggtccgtttaaatttgtatgaaagtttccgtttta 15842045  T
Q  210 ctgaggagggtttggagatatcccatcttcaatatgcc 247  Q
      ||||| || |||| ||| ||||||||||||||||||    
T  15842046 gagaggacgggttggcgatttcccatcttcaatatgcc 15842083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 44 - 88
Target Start/End: Complemental strand, 21220738 - 21220694
Alignment:
Q  44 gtagagaaggtgaatgacaaacctctcaaaaaagtttttgaattt 88  Q
    |||||||||||||| |||||||||| ||||||||| |||||||||    
T  21220738 gtagagaaggtgaaagacaaacctcccaaaaaagtatttgaattt 21220694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 102 - 166
Target Start/End: Original strand, 10237916 - 10237980
Alignment:
Q  102 agcaaggagatccgcttgcgccttttttgttccttgtggttgcggaagggtttagtgggttgatg 166  Q
    ||||||| ||||||||||| || |||||||||||| |||| |||||||| ||||| |||||||||    
T  10237916 agcaaggtgatccgcttgcaccatttttgttccttttggtagcggaaggttttagcgggttgatg 10237980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 122 - 166
Target Start/End: Original strand, 25660324 - 25660368
Alignment:
Q  122 ccttttttgttccttgtggttgcggaagggtttagtgggttgatg 166  Q
    ||||||||||||||| |||| |||||||| |||||||||||||||    
T  25660324 ccttttttgttccttttggtggcggaaggttttagtgggttgatg 25660368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 122 - 177
Target Start/End: Original strand, 41448549 - 41448604
Alignment:
Q  122 ccttttttgttccttgtggttgcggaagggtttagtgggttgatgtgtaatgcggt 177  Q
    |||||||||||  | |||||||||||| ||||||||||||||||| | ||||||||    
T  41448549 ccttttttgtttttggtggttgcggaaaggtttagtgggttgatggggaatgcggt 41448604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 104 - 177
Target Start/End: Original strand, 16648793 - 16648866
Alignment:
Q  104 caaggagatccgcttgcgccttttttgttccttgtggttgcggaagggtttagtgggttgatgtgtaatgcggt 177  Q
    |||||||||||  | || |||||||||||  | |||||||||||||| |||| |||||| ||||| ||||||||    
T  16648793 caaggagatccattggctccttttttgtttttggtggttgcggaaggttttaatgggttaatgtggaatgcggt 16648866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 104 - 177
Target Start/End: Complemental strand, 28518763 - 28518690
Alignment:
Q  104 caaggagatccgcttgcgccttttttgttccttgtggttgcggaagggtttagtgggttgatgtgtaatgcggt 177  Q
    ||||| ||||||||||| ||||| ||||||||| | || || ||||| |||||||| |||||||  ||||||||    
T  28518763 caaggtgatccgcttgctcctttcttgttccttctagtggcagaaggttttagtggcttgatgtcgaatgcggt 28518690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University