View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16562_high_2 (Length: 544)
Name: NF16562_high_2
Description: NF16562
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16562_high_2 |
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| [»] scaffold0027 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 462; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 462; E-Value: 0
Query Start/End: Original strand, 1 - 494
Target Start/End: Original strand, 24455405 - 24455898
Alignment:
| Q |
1 |
ttcaagtgggtagctacctttatctcctctcaaagagagcaatactttgattcctttggattgacagaatttgatatcagaggatagggcaatgcatcca |
100 |
Q |
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| T |
24455405 |
ttcaagtgggtagctacctttatctcctctcaaagagagcaatactttgattcctttggattgacagaatttgatgtcagaggatagggccatgcatcca |
24455504 |
T |
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| Q |
101 |
ttagtactctgtggattacaatgaccagctaggttaatcatgggattttgggttgggataaaggttggtaagaatgctatgatcacatattcatagtttc |
200 |
Q |
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| T |
24455505 |
ttagcactctgtggattacaatgaccagctaggttaatcatgggattttgggttgggataaaggttggtaagaaagctatgatcacatattcatagtttc |
24455604 |
T |
|
| Q |
201 |
ttgtggcacaagtttcggctaacgagccttcattaccattttggccccaatagattacaattttgccagcatttgaacaatttgccaacgctaacatgac |
300 |
Q |
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| T |
24455605 |
ttgtggcacaagtttcggctaacgagccttcattaccattttggccccaatagattacaattttgccagcatttgaacaatttgctaatcctaacatgac |
24455704 |
T |
|
| Q |
301 |
taatgagagggttaagattgagaatagaaatcttagtgccattgctgatttggaataaattttagactaagaagtgttggtggagaatggcttttataaa |
400 |
Q |
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| T |
24455705 |
taatgagagggttaagattgagaatagaaatcttagtgccattgctgatttggaataaattttagactaagaagtgttggtggagaatggcttttataaa |
24455804 |
T |
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| Q |
401 |
gttcatatgtcacaaacctctttaaaactttggagttttcctcataaaaacgtagcttggcagtcactttatgtaaaatattttatcaaattct |
494 |
Q |
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| T |
24455805 |
gttcatatgtcacaaacctctttaaaactttggagttttcctcataaaaacgtagcttggcaatcactttatgtaaaatattttatcaaattct |
24455898 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 40 - 278
Target Start/End: Original strand, 24367821 - 24368056
Alignment:
| Q |
40 |
caatactttgattcctttggattgacagaatttgatatcagaggatagggcaatgcatccattagtactctgtggattacaatgaccagctaggttaatc |
139 |
Q |
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| T |
24367821 |
caatactttgattcctttggcttgacatgacttgatgtctgagcttaagccagtgcatccatta---ctgtatggatcacaatgaccagctagattaatc |
24367917 |
T |
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| Q |
140 |
atgggattttgggttgggataaaggttggtaagaatgctatgatcacatattcatagtttcttgtggcacaagtttcggctaacgagccttcattaccat |
239 |
Q |
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| T |
24367918 |
atcggagtttggccatctccgaaggtcggtaagaaggctatgatcacatattcatagtttcctgtggcacaagcctcagctaacgtgccctcgtttccgt |
24368017 |
T |
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| Q |
240 |
tttggccccaatagattacaattttgccagcatttgaac |
278 |
Q |
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| T |
24368018 |
tctggccccagtagattgcaatttttcctgcattagaac |
24368056 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 493 - 534
Target Start/End: Original strand, 24455915 - 24455956
Alignment:
| Q |
493 |
cttactaatttatcaatcaattggcattatttctcacctatg |
534 |
Q |
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| T |
24455915 |
cttactaatttaccaatcaattggcattatttctcacctatg |
24455956 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0027 (Bit Score: 64; Significance: 1e-27; HSPs: 1)
Name: scaffold0027
Description:
Target: scaffold0027; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 161 - 308
Target Start/End: Complemental strand, 148457 - 148310
Alignment:
| Q |
161 |
aaggttggtaagaatgctatgatcacatattcatagtttcttgtggcacaagtttcggctaacgagccttcattaccattttggccccaatagattacaa |
260 |
Q |
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| T |
148457 |
aaggttggtaagaaggctatgatcacatattcgtagttccctgtggcacaagcctcggctaacgtgccctcgtttccattctggccccaataaattgaaa |
148358 |
T |
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| Q |
261 |
ttttgccagcatttgaacaatttgccaacgctaacatgactaatgaga |
308 |
Q |
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| T |
148357 |
ttttgccagcattagaatcatttgccagtgctaaaatgactaaggaga |
148310 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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