View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16562_high_20 (Length: 239)

Name: NF16562_high_20
Description: NF16562
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16562_high_20
NF16562_high_20
[»] chr5 (7 HSPs)
chr5 (17-203)||(33821408-33821594)
chr5 (130-203)||(33734191-33734264)
chr5 (132-182)||(33748665-33748715)
chr5 (15-72)||(33748542-33748599)
chr5 (15-72)||(33834662-33834719)
chr5 (132-182)||(33834785-33834835)
chr5 (132-193)||(33762658-33762719)
[»] chr8 (2 HSPs)
chr8 (132-198)||(21305761-21305827)
chr8 (18-62)||(21305671-21305715)
[»] chr7 (1 HSPs)
chr7 (128-188)||(5471321-5471381)
[»] scaffold0247 (1 HSPs)
scaffold0247 (147-191)||(22284-22328)


Alignment Details
Target: chr5 (Bit Score: 179; Significance: 1e-96; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 17 - 203
Target Start/End: Original strand, 33821408 - 33821594
Alignment:
Q  17 cagaagcacaatctctaccaatttgatttgaaaccataatctctgatgagccatcacgatccatgagaattttactatcattatttgaattcaatattgg 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33821408 cagaagcacaatctctaccaatttgatttgaaaccataatctctgatgagccatcacgatccatgagaattttactatcattatttgaattcaatattgg 33821507  T
Q  117 ttgtgtcatgaaagatgaatgagttgaaagagttataggtcgaggtttaataacttcatgagctttcattgtttcctcaggtctctc 203  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||    
T  33821508 ttgtgtcatgaaagatgaatgagttgaaagagttataggtcgaggtataataacttcatgagctttcattgtttccttaggtctctc 33821594  T

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Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 130 - 203
Target Start/End: Original strand, 33734191 - 33734264
Alignment:
Q  130 gatgaatgagttgaaagagttataggtcgaggtttaataacttcatgagctttcattgtttcctcaggtctctc 203  Q
    |||||||||||||||| | ||  |||| | |||||||||||||||||||||||||||||||||| |||| ||||    
T  33734191 gatgaatgagttgaaaaaattcgaggttggggtttaataacttcatgagctttcattgtttccttaggtttctc 33734264  T

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Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 132 - 182
Target Start/End: Original strand, 33748665 - 33748715
Alignment:
Q  132 tgaatgagttgaaagagttataggtcgaggtttaataacttcatgagcttt 182  Q
    |||||||||||||| |||||  || ||||||||||||||||||||||||||    
T  33748665 tgaatgagttgaaaaagttaatggacgaggtttaataacttcatgagcttt 33748715  T

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Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 15 - 72
Target Start/End: Original strand, 33748542 - 33748599
Alignment:
Q  15 atcagaagcacaatctctaccaatttgatttgaaaccataatctctgatgagccatca 72  Q
    |||||||||||||||||||||||||||||  | ||||||| | ||||||||| |||||    
T  33748542 atcagaagcacaatctctaccaatttgatcaggaaccatagtgtctgatgaggcatca 33748599  T

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Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 15 - 72
Target Start/End: Original strand, 33834662 - 33834719
Alignment:
Q  15 atcagaagcacaatctctaccaatttgatttgaaaccataatctctgatgagccatca 72  Q
    |||||||||||||||||||||||||||||  ||||| ||| | ||||||||| |||||    
T  33834662 atcagaagcacaatctctaccaatttgatcagaaactatagtgtctgatgaggcatca 33834719  T

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Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 132 - 182
Target Start/End: Original strand, 33834785 - 33834835
Alignment:
Q  132 tgaatgagttgaaagagttataggtcgaggtttaataacttcatgagcttt 182  Q
    |||||||||||||| |||||  || |||||||| |||||||||||||||||    
T  33834785 tgaatgagttgaaaaagttaatggacgaggtttgataacttcatgagcttt 33834835  T

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Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 132 - 193
Target Start/End: Original strand, 33762658 - 33762719
Alignment:
Q  132 tgaatgagttgaaagagttataggtcgaggtttaataacttcatgagctttcattgtttcct 193  Q
    |||||||||||||| | ||  |||| ||||||||||||||||||| | |||||| |||||||    
T  33762658 tgaatgagttgaaaaaattcgaggttgaggtttaataacttcatgtgttttcatagtttcct 33762719  T

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Target: chr8 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 132 - 198
Target Start/End: Original strand, 21305761 - 21305827
Alignment:
Q  132 tgaatgagttgaaagagttataggtcgaggtttaataacttcatgagctttcattgtttcctcaggt 198  Q
    ||||||| |||| | ||||||||| ||||||||||||||||||||||||||||| ||||||| ||||    
T  21305761 tgaatgacttgacaaagttataggacgaggtttaataacttcatgagctttcatggtttccttaggt 21305827  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 62
Target Start/End: Original strand, 21305671 - 21305715
Alignment:
Q  18 agaagcacaatctctaccaatttgatttgaaaccataatctctga 62  Q
    ||||||||| ||||||||||||||||||||| ||||| |||||||    
T  21305671 agaagcacactctctaccaatttgatttgaagccatattctctga 21305715  T

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Target: chr7 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 128 - 188
Target Start/End: Complemental strand, 5471381 - 5471321
Alignment:
Q  128 aagatgaatgagttgaaagagttataggtcgaggtttaataacttcatgagctttcattgt 188  Q
    ||||||| |||||||||| ||||||||||| ||||||||||||||  ||||||||||||||    
T  5471381 aagatgattgagttgaaaaagttataggtctaggtttaataacttggtgagctttcattgt 5471321  T

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Target: scaffold0247 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0247
Description:

Target: scaffold0247; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 147 - 191
Target Start/End: Complemental strand, 22328 - 22284
Alignment:
Q  147 agttataggtcgaggtttaataacttcatgagctttcattgtttc 191  Q
    ||||||||| |||||||||||||| ||||||||||||||||||||    
T  22328 agttataggccgaggtttaataacctcatgagctttcattgtttc 22284  T

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