View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16562_high_4 (Length: 429)
Name: NF16562_high_4
Description: NF16562
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16562_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 268; Significance: 1e-149; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 18 - 416
Target Start/End: Original strand, 49954535 - 49954932
Alignment:
| Q |
18 |
agtggcttctcgtgactttaaaaagagagagtgtgtgtgaaagtagtgaagagttgctaaagctagcttaatcagatacttgctaattcctagctagcta |
117 |
Q |
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| T |
49954535 |
agtggcttctcgtgactttaaaaagagagagtgtgtgtgaaagtagtgaagagttgctaaagctagcttaatcagatacttgctaattcctagctagcta |
49954634 |
T |
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| Q |
118 |
acttcatctggtttggttgagacttaagaaaccaaatgatcatagtaaggaatggcaaagaaataccttttttgagaaaagctaatgagtgtcctcaata |
217 |
Q |
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| T |
49954635 |
acttcatctggtttggttgagacttaagaaaccaaatgatcatagtaaggaatggcaaagaaatatcttttttgggaaaagctaatgagtgccctcatga |
49954734 |
T |
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| Q |
218 |
cattgtttcgtgaacttaaatggtaagtttatgttatcaatgctttgaaaattggagnnnnnnnnnnnnnnaaggaataatttcatcattaaaaatcctt |
317 |
Q |
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| T |
49954735 |
cattgtttcgtgaccttaaatggtaagtttatgttatcaatgctttgaaaattggagttttttgcttttttaaggagtaatttcatcattaaaaatcttt |
49954834 |
T |
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| Q |
318 |
taaaaatgtttttaagacgcttgttagcaatacttttnnnnnnntaaaatatatatccaaagtattcccatcaaaagttagagattaatcattcaatct |
416 |
Q |
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||||||||||||||||| |||||||||||||| |||| | |||||| ||||||||||| ||| ||| ||||||||||||||||||||||||| |
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| T |
49954835 |
taaaaatgtttttaagaggcttgttagcaata-ttttttaaaaaaataatataaatccaaagtatccccgtcagaagttagagattaatcattcaatct |
49954932 |
T |
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