View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16562_high_8 (Length: 307)
Name: NF16562_high_8
Description: NF16562
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16562_high_8 |
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Alignment Details
Target: chr2 (Bit Score: 152; Significance: 2e-80; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 9 - 164
Target Start/End: Original strand, 9299271 - 9299426
Alignment:
| Q |
9 |
agaagaacaccaacaccaataattttctttaacaaaaggaggtcactagagtatgaatttgttctctatgatccactaaaagagaaaaactaatgctaaa |
108 |
Q |
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| T |
9299271 |
agaagaacaccaacaccaataattttctttaacaaaaggaggtcactagagtatgaatttgttctctatgatccactaaaagagaaaaactaatgctaaa |
9299370 |
T |
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| Q |
109 |
atttcactagtataacttctttctacagcataagggagtgcataaatgtgcagaaa |
164 |
Q |
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| T |
9299371 |
atttcactagtataacttctttttacagcataagggagtgcataaatgtgcagaaa |
9299426 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 188 - 291
Target Start/End: Original strand, 9299414 - 9299517
Alignment:
| Q |
188 |
aaatgtgcagaaattggaaacaaccagaaacgcagtgacaaaatgaaattatgcagcagcaagaatgtactatagtagaaaataactccagataatgcag |
287 |
Q |
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| T |
9299414 |
aaatgtgcagaaattggaaacaaccagaaacgcagtggcaaaatgaaattatgcagcagcaagaatgtactatagtagaaaataactccagataatgcag |
9299513 |
T |
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| Q |
288 |
taaa |
291 |
Q |
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|||| |
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| T |
9299514 |
taaa |
9299517 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 58 - 128
Target Start/End: Original strand, 7724968 - 7725039
Alignment:
| Q |
58 |
agtatgaatttgttctctatgatccactaaaagagaaaaactaatgc-taaaatttcactagtataacttct |
128 |
Q |
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| T |
7724968 |
agtatgaacttgttctcgatgatccattcaaagagaaaaactaatgcgaaaaatttcaccagtataacttct |
7725039 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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