View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16562_low_1 (Length: 733)
Name: NF16562_low_1
Description: NF16562
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16562_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 533; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 533; E-Value: 0
Query Start/End: Original strand, 80 - 719
Target Start/End: Complemental strand, 24833539 - 24832902
Alignment:
| Q |
80 |
atgttttatttggtgttctttattttcattgacaaattattttgcttagctcggatccatcttctctatatatagatatggaaaccaagtttacgttgat |
179 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||| |
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| T |
24833539 |
atgttttatttggtgttctttattttcattgacaaattattttgcttagctcggatccaccttctctatatatagatatggaaaccaagtttacgctgat |
24833440 |
T |
|
| Q |
180 |
gagctagattctctttatggagattcccgagccaaatggttagattatgaggtatacaccttccaatccttctcaatttcaaatttggctcagattaata |
279 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24833439 |
gagctagactctctttatggagattcccgagccaaatggttaggttatgaggtacacaccttccaatccttctcaatttcaaatttggctcagattaata |
24833340 |
T |
|
| Q |
280 |
tatgttgcttaaaataatttataatgtttcaatattttatccatgatataggtccactcttgtccatttgcattattgcatgtcagtgcctgcaatagta |
379 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| |||||||||||||||| |
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| T |
24833339 |
tatgttgcttaaaataatt-ataatgtttcaatattttatccatgatatacgtccactcttgtccttttgcattattgcatgttagtgcctgcaatagta |
24833241 |
T |
|
| Q |
380 |
attgtttttgtgtctttgacatttgcaatagtgagaatcttagaaaataattcataagtttgacttcaatccatgtagaatagtggctctggatactgct |
479 |
Q |
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| T |
24833240 |
attgtttttgtgtctttgacatttgcaatagtgagaatcttagaaaataattcataagtttgacttcaatccatgtagaatagtggctctggcgactgct |
24833141 |
T |
|
| Q |
480 |
tcttttgagatgggtttttcatttgctaacaatgcttcaactcccgactgtttcggcggctactactcctgcaattggtaagctgtgttttataaattga |
579 |
Q |
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| T |
24833140 |
tcttttgagatgagtttttcatttgctaacaatgcttcaactcccgactgtttcggcggctactactcctgcagttggtaagctgtgttttataaattga |
24833041 |
T |
|
| Q |
580 |
aatcatgtttaacgtctgtttttgaggtgtgagaagtgaactgtctttattagtgttatagtggagnnnnnnnnnnattctagtttcgtatgtgattcgt |
679 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| |||||||||||||||||| | |
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| T |
24833040 |
aatcatgtttaatgtctgtttttgaggtgtgagaagtgaactgtctttattagtgttagagtggag-tttttttttattttagtttcgtatgtgattctt |
24832942 |
T |
|
| Q |
680 |
ttatatctttgattttatattgctgtcaataatggatatt |
719 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
24832941 |
ttatatctttgattttatattgctgtcaataatggatatt |
24832902 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 109; Significance: 2e-54; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 29 - 269
Target Start/End: Complemental strand, 18187144 - 18186904
Alignment:
| Q |
29 |
ccccatgtaccactctc--tctcttagtccaaatacacacacaactgaacacaatgttttatttggtgttctttattttcattgacaaattattttgctt |
126 |
Q |
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||||||||||| ||||| |||||| ||||||| ||||||||||||||||||||||||||||| ||||| |||||||||||||| || | |||||| || |
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| T |
18187144 |
ccccatgtacccctctcgctctcttcgtccaaa--cacacacaactgaacacaatgttttattttgtgttgtttattttcattgataattcattttgttt |
18187047 |
T |
|
| Q |
127 |
agctcggatccatcttctctatatatagatatggaaaccaagtttacgttgatgagctagattctctttatggagattcccgagccaaatggttagatta |
226 |
Q |
| |
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||| || |||| ||||||||||| ||||||||||||||||||||| | ||| |||||| | ||||| ||||| || |||||||||||| |||||| || |
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| T |
18187046 |
ggcttgggtccaccttctctatatctagatatggaaaccaagtttatgctgaagagctaaactctctatatggtgaatcccgagccaaagggttaggttc |
18186947 |
T |
|
| Q |
227 |
tgaggtatacaccttccaatccttctcaatttcaaatttggct |
269 |
Q |
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||||||| ||||||| |||||||||| ||||||||||| |||| |
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| T |
18186946 |
tgaggtacacacctttcaatccttcttaatttcaaattcggct |
18186904 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 268 - 311
Target Start/End: Complemental strand, 18186672 - 18186629
Alignment:
| Q |
268 |
ctcagattaatatatgttgcttaaaataatttataatgtttcaa |
311 |
Q |
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| T |
18186672 |
ctcagattaatatatgttgcttaaagaaatttataatgtttcaa |
18186629 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 346 - 406
Target Start/End: Complemental strand, 18186311 - 18186252
Alignment:
| Q |
346 |
tttgcattattgcatgtcagtgcctgcaatagtaattgtttttgtgtctttgacatttgca |
406 |
Q |
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| T |
18186311 |
tttgcattattgcatgttagtgcctgcaatagtaatcg-ttctctttctttgacatttgca |
18186252 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 272 - 323
Target Start/End: Complemental strand, 34669475 - 34669424
Alignment:
| Q |
272 |
gattaatatatgttgcttaaaataatttataatgtttcaatattttatccat |
323 |
Q |
| |
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||||||||||||||||||||| ||||||||||||||||| ||||||||||| |
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| T |
34669475 |
gattaatatatgttgcttaaagaaatttataatgtttcaagattttatccat |
34669424 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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