View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16562_low_12 (Length: 297)
Name: NF16562_low_12
Description: NF16562
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16562_low_12 |
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Alignment Details
Target: chr5 (Bit Score: 108; Significance: 3e-54; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 1 - 151
Target Start/End: Original strand, 9394164 - 9394314
Alignment:
| Q |
1 |
acacaattttcaacattaaatcaaaagaaaggaacctagaaccaaaattttaacatgaatcnnnnnnnnnnnnncataatttccatcaccaaatcaaaga |
100 |
Q |
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| T |
9394164 |
acacaattttcaacattaaatcaaaagaaaggaacctagaaccaaaatttcaacatgaatcaaaaaataaaaaacataatttccatcaccaaatcaaaga |
9394263 |
T |
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| Q |
101 |
aatgaaccataaaacacagttttcaacatgaaattcaaaccaatgaaccat |
151 |
Q |
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| T |
9394264 |
aatgaaccataaaacacagttttcaacatgaaattcaaaccaatgaaccat |
9394314 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 183 - 278
Target Start/End: Original strand, 9394334 - 9394429
Alignment:
| Q |
183 |
tttcaacataattaaaatagaaacagaatttccaacatgcaataaaagaaataaacactaaaacccaattttcaacacgaaatcatatgaataaac |
278 |
Q |
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| T |
9394334 |
tttcaacataaataaaatagaaacagaatttccaacatgcaataaaagaaataaacactaaaacccaattttcaacacgaaatcatatgaataaac |
9394429 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 75 - 130
Target Start/End: Original strand, 9394011 - 9394066
Alignment:
| Q |
75 |
cataatttccatcaccaaatcaaagaaatgaaccataaaacacagttttcaacatg |
130 |
Q |
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| T |
9394011 |
cataatctccaacaccaaatcaaagaaatgaatcctaaaacacagttttcaacatg |
9394066 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 75 - 134
Target Start/End: Original strand, 9394125 - 9394184
Alignment:
| Q |
75 |
cataatttccatcaccaaatcaaagaaatgaaccataaaacacagttttcaacatgaaat |
134 |
Q |
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| T |
9394125 |
cataatttccaacaccaaatcaaagaaatgaatccaaaaacacaattttcaacattaaat |
9394184 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 96 - 134
Target Start/End: Original strand, 31943650 - 31943688
Alignment:
| Q |
96 |
aaagaaatgaaccataaaacacagttttcaacatgaaat |
134 |
Q |
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| T |
31943650 |
aaagaaatgaaccctaaaacacatttttcaacatgaaat |
31943688 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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