View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16562_low_17 (Length: 281)
Name: NF16562_low_17
Description: NF16562
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16562_low_17 |
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| [»] chr3 (1 HSPs) |
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| [»] chr1 (1 HSPs) |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 3 - 281
Target Start/End: Original strand, 24203227 - 24203497
Alignment:
| Q |
3 |
cattttctccatcctgtaagatctcatgagatccatgtgagggatattatcaacttgaagaagttatttgagtatgcagtcatcaccttgcaagccagtt |
102 |
Q |
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| T |
24203227 |
cattttctccatcctgtaagatctcatgagatccatgtgagggatattatcaactcgaagaagttatttgagtacgcagtcatcaccttgcaagccagtt |
24203326 |
T |
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| Q |
103 |
tgtaaggtttgagttagacccaacctaaattctaggtgttacctactaaactggaatatcttttcttgacttacaccgctttgaatttaatgactttgtc |
202 |
Q |
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| T |
24203327 |
tgtaagggctgagttagacccaacctaaattctaagtattcc-------actggaatatcttttgttgacttaaaccagtttgaatttaatgac-ttgtc |
24203418 |
T |
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| Q |
203 |
cttgaagtattcttcaagagtttataggttggttcttgtccttgaatttataccttacatactttttaagcattaaggt |
281 |
Q |
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| T |
24203419 |
cttgaagtattctgcaagagtttataggttggttcttgtccttgaatttataccatacatactttttaagcattaaggt |
24203497 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 59; Significance: 5e-25; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 101 - 281
Target Start/End: Complemental strand, 29409987 - 29409797
Alignment:
| Q |
101 |
tttgtaaggtttgagttagacccaacctaaattctaggtgttacctactaaactggaatatcttttcttgacttacaccgctttgaatttaatgactt-- |
198 |
Q |
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| T |
29409987 |
tttgtaagggttgagttaggcccaccctaaattctaagagttaattgctaaactggaatatcttttattgacatacacctctttgaatttaatgacttca |
29409888 |
T |
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| Q |
199 |
-------tg-tccttgaagtattcttcaagagtttataggttggttcttgtccttgaatttataccttacatactttttaagcattaaggt |
281 |
Q |
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| T |
29409887 |
caaatcgtgttggttggaatatactgcaagagtttataggcgggttcttgtccttgaactagtaccatacatactttttaagcattaaggt |
29409797 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 239 - 281
Target Start/End: Complemental strand, 27560418 - 27560376
Alignment:
| Q |
239 |
tgtccttgaatttataccttacatactttttaagcattaaggt |
281 |
Q |
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| T |
27560418 |
tgtccttgaattaataccatacatactttttaagcattaaggt |
27560376 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 140 - 198
Target Start/End: Complemental strand, 27560486 - 27560428
Alignment:
| Q |
140 |
gttacctactaaactggaatatcttttcttgacttacaccgctttgaatttaatgactt |
198 |
Q |
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| T |
27560486 |
gttacctactaaacttgaataccttttgttgatttacacctctttgaattgaatgactt |
27560428 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 140 - 198
Target Start/End: Complemental strand, 36668010 - 36667952
Alignment:
| Q |
140 |
gttacctactaaactggaatatcttttcttgacttacaccgctttgaatttaatgactt |
198 |
Q |
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| T |
36668010 |
gttacctactaaactggaatactgtttgtcgatttacacctctttgaatttaatgactt |
36667952 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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