View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16562_low_18 (Length: 265)
Name: NF16562_low_18
Description: NF16562
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16562_low_18 |
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Alignment Details
Target: chr7 (Bit Score: 226; Significance: 1e-124; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 18 - 255
Target Start/End: Original strand, 45282650 - 45282887
Alignment:
| Q |
18 |
cattcataagtacataattaattaaataaaataaaaaagttttgatcgatgataattgaattacgtaccgaaggtggcggtttgcatggtcttgacacca |
117 |
Q |
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| T |
45282650 |
cattcataagtaaataattaattaaataaaataaaaaagttttgatcgatgataattgaattaagtaccgaaggtggcggtttgcatggtcttgacacca |
45282749 |
T |
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| Q |
118 |
gcagcaaagctctttctaccggtgacaatggtccttgcagggccatcaccatacataagaatgttaacagcatccttggggacagtgatgtattcgtcat |
217 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45282750 |
gcagcaaagctctttctaccagtgacaatggtccttgcagggccatcaccatacataagaatgttaacagcatccttggggacagtgatgtattcgtcat |
45282849 |
T |
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| Q |
218 |
agacaccggccttaacgtagataacatatctgcctttg |
255 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
45282850 |
agacaccggccttaacgtagataacatatctgcctttg |
45282887 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 33 - 255
Target Start/End: Original strand, 45274423 - 45274646
Alignment:
| Q |
33 |
aattaattaaataaaataaaaaa-gttttgatcgatgataattgaattacgtaccgaaggtggcggtttgcatggtcttgacaccagcagcaaagctctt |
131 |
Q |
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| T |
45274423 |
aattaatcaaataaaataaaaaaagctttgatagataataattgaattacgtaccgaaggtggcggtttgcatggtcttggtaccggcagcaaagttctt |
45274522 |
T |
|
| Q |
132 |
tctaccggtgacaatggtccttgcagggccatcaccatacataagaatgttaacagcatccttggggacagtgatgtattcgtcatagacaccggcctta |
231 |
Q |
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| T |
45274523 |
tctaccggtgacaatggtccttgcagggccatcaccatacataagaatgttaacagcatccttgggtacagtgatgtattcgtcatagacaccagcctta |
45274622 |
T |
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| Q |
232 |
acgtagataacatatctgcctttg |
255 |
Q |
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| T |
45274623 |
acgtagataaaatacctgcctttg |
45274646 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 18 - 255
Target Start/End: Original strand, 45294037 - 45294275
Alignment:
| Q |
18 |
cattcataag-tacataattaattaaataaaataaaaaagttttgatcgatgataattgaattacgtaccgaaggtggcggtttgcatggtcttgacacc |
116 |
Q |
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|||||||||| |||| |||| ||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
45294037 |
cattcataaggtacacaatttattaaataaaataaaaaagttgtgatcgatgataattgaattacttaccgaaggtggcggtttgcatggtcttgacacc |
45294136 |
T |
|
| Q |
117 |
agcagcaaagctctttctaccggtgacaatggtccttgcagggccatcaccatacataagaatgttaacagcatccttggggacagtgatgtattcgtca |
216 |
Q |
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| T |
45294137 |
agcagcaccgttctttcttccggtaacaatggtctttccggggccatcaccatacataagaatgttaacagcgtctttgggaatagtgatgtattcatca |
45294236 |
T |
|
| Q |
217 |
tagacaccggccttaacgtagataacatatctgcctttg |
255 |
Q |
| |
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||||| || ||||||||||||||| ||||||||||||| |
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| T |
45294237 |
tagacgccagccttaacgtagatagtatatctgcctttg |
45294275 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 18 - 255
Target Start/End: Original strand, 45302997 - 45303235
Alignment:
| Q |
18 |
cattcataag-tacataattaattaaataaaataaaaaagttttgatcgatgataattgaattacgtaccgaaggtggcggtttgcatggtcttgacacc |
116 |
Q |
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|
|||||||||| |||| |||| ||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
45302997 |
cattcataaggtacacaatttattaaataaaataaaaaagttgtgatcgatgataattgaattacttaccgaaggtggcggtttgcatggtcttgacacc |
45303096 |
T |
|
| Q |
117 |
agcagcaaagctctttctaccggtgacaatggtccttgcagggccatcaccatacataagaatgttaacagcatccttggggacagtgatgtattcgtca |
216 |
Q |
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||||||| | ||||||| ||||| ||||||||| || | |||||||||||||||||||||||||||||||| || ||||| | |||||||||||| ||| |
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| T |
45303097 |
agcagcaccgttctttcttccggtaacaatggtctttccggggccatcaccatacataagaatgttaacagcgtctttgggaatagtgatgtattcatca |
45303196 |
T |
|
| Q |
217 |
tagacaccggccttaacgtagataacatatctgcctttg |
255 |
Q |
| |
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||||| || ||||||||||||||| ||||||||||||| |
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| T |
45303197 |
tagacgccagccttaacgtagatagtatatctgcctttg |
45303235 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 128 - 255
Target Start/End: Original strand, 45270986 - 45271113
Alignment:
| Q |
128 |
tctttctaccggtgacaatggtccttgcagggccatcaccatacataagaatgttaacagcatccttggggacagtgatgtattcgtcatagacaccggc |
227 |
Q |
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|||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
45270986 |
tctttctaccagtgacaatggtctttgcagggccatcaccatacataagaatgttaacagcctccttggggacagtgatgtattcgtcatagacaccggc |
45271085 |
T |
|
| Q |
228 |
cttaacgtagataacatatctgcctttg |
255 |
Q |
| |
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|||||||||||||||||||||| ||||| |
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| T |
45271086 |
cttaacgtagataacatatctgtctttg |
45271113 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 18 - 95
Target Start/End: Original strand, 45270878 - 45270953
Alignment:
| Q |
18 |
cattcataag-tacataattaattaaataaaataaaaaagttttgatcgatgataattgaattacgtaccgaaggtggc |
95 |
Q |
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|||||||||| |||| ||||||||||||||||| ||||| |||||||||| |||| |||||||||||| |||||||| |
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| T |
45270878 |
cattcataaggtacacaattaattaaataaaat--aaaagctttgatcgat-ataactgaattacgtacaaaaggtggc |
45270953 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 208 - 253
Target Start/End: Original strand, 38583244 - 38583289
Alignment:
| Q |
208 |
tattcgtcatagacaccggccttaacgtagataacatatctgcctt |
253 |
Q |
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| T |
38583244 |
tattcgtcatagacaccagccttgacgtagatgacatatctacctt |
38583289 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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