View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16562_low_19 (Length: 262)
Name: NF16562_low_19
Description: NF16562
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16562_low_19 |
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| [»] scaffold0027 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 226; Significance: 1e-124; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 1 - 246
Target Start/End: Complemental strand, 24455322 - 24455077
Alignment:
| Q |
1 |
ctgctgttctcgatggcattgacttcgatatcgaaggaggttcgtcaaaccaacattggggcgaccttgcaaggtatcttaaagggtataatggcaaaaa |
100 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24455322 |
ctgctgttctcgatggcattgactttgatatcgaaggaggttcgtcaaaccaacattggggcgaccttgcaaggtatcttaaagggtataatggcaaaaa |
24455223 |
T |
|
| Q |
101 |
agtttacataactgcagctcctcagtgtccatttcctgacgcttggttaggaaatgcactcacaaccggactttttgattttgtttgggtacaattctac |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| ||||| ||||||||||||||||||||||||||||||||| |
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| T |
24455222 |
agtttacataactgcagctcctcagtgtccatttcctgatgcttggttgggaaatgcacttacaacgggactttttgattttgtttgggtacaattctac |
24455123 |
T |
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| Q |
201 |
aataacccttcttgtcaatacaattccgatgaatttaacaatttcg |
246 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24455122 |
aataacccttcttgtcaatacaattccgatgaatttaacaatttcg |
24455077 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 24367699 - 24367483
Alignment:
| Q |
1 |
ctgctgttctcgatggcattgacttcgatatcgaaggaggttcgtcaaaccaacattggggcgaccttgcaaggtatcttaaagggtataatggcaaaaa |
100 |
Q |
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|||||||||| |||||||||||||| |||||||||||||| || || |||||||||||| || ||||| ||||| |||||||||| || ||| || |
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| T |
24367699 |
ctgctgttcttgatggcattgactttgatatcgaaggaggatc---aagccaacattggggtgatcttgctaggtaccttaaagggttcaa---caagaa |
24367606 |
T |
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| Q |
101 |
agtttacataactgcagctcctcagtgtccatttcctgacgcttggttaggaaatgcactcacaaccggactttttgattttgtttgggtacaattctac |
200 |
Q |
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|||||||||||||||||||||||| |||||||||||||| |||||| ||||||||||||| ||||| ||||||||||||| ||||||||||||||||||| |
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| T |
24367605 |
agtttacataactgcagctcctcaatgtccatttcctgatgcttggataggaaatgcacttacaacaggactttttgattatgtttgggtacaattctac |
24367506 |
T |
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| Q |
201 |
aataacccttcttgtcaatacaa |
223 |
Q |
| |
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|| |||||| ||||||||||||| |
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| T |
24367505 |
aacaaccctccttgtcaatacaa |
24367483 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0027 (Bit Score: 126; Significance: 5e-65; HSPs: 1)
Name: scaffold0027
Description:
Target: scaffold0027; HSP #1
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 148697 - 148917
Alignment:
| Q |
1 |
ctgctgttctcgatggcattgacttcgatatcgaaggaggttcgtcaaaccaacattggggcgaccttgcaaggtatcttaaagggtataatggcaaaaa |
100 |
Q |
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|||||||||| || ||||| ||||||||||| |||||||| |||||||||||||||||| || ||||| | ||| |||||||||||||| || || || |
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| T |
148697 |
ctgctgttcttgacggcatcgacttcgatattgaaggagg---gtcaaaccaacattggggtgatcttgccaagtaccttaaagggtataacgggaagaa |
148793 |
T |
|
| Q |
101 |
agtttacataactgcagctcctcagtgtccatttcctgacgcttggttaggaaatgcactcacaaccggactttttgattttgtttgggtacaattctac |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||| ||||| || || ||||||| |||||||||||| |||||| |
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| T |
148794 |
agtttacataactgcagctcctcagtgtccatttcctgatgcttggataggaaatgcacttacaacaggcctctttgattatgtttgggtacagttctac |
148893 |
T |
|
| Q |
201 |
aataacccttcttgtcaatacaat |
224 |
Q |
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||||||||| |||||||||||||| |
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| T |
148894 |
aataaccctccttgtcaatacaat |
148917 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 19136071 - 19135856
Alignment:
| Q |
1 |
ctgctgttctcgatggcattgacttcgatatcgaaggaggttcgtcaaaccaacattggggcgaccttgcaaggtatcttaaagggtataatggcaaaaa |
100 |
Q |
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||||||||||||||||||| || ||||| ||||||||||| | ||||| |||||| || ||||| ||||| |||||||| || | ||||||| |
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| T |
19136071 |
ctgctgttctcgatggcatcgatttcgacatcgaaggaggaac---aaacctttattgggatgatcttgctaggtaccttaaaggataca---gcaaaaa |
19135978 |
T |
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| Q |
101 |
agtttacataactgcagctcctcagtgtccatttcctgacgcttggttaggaaatgcactcacaaccggactttttgattttgtttgggtacaattctac |
200 |
Q |
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| | ||| | | ||||||||||| || || |||||||| |||||| ||||||| || || | ||| || ||||| |||| ||||||||| ||||||||| |
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| T |
19135977 |
attgtacttgtcagcagctcctcaatgcccttttcctgatgcttggataggaaaagccctaaaaacaggtcttttcgattgtgtttgggttcaattctac |
19135878 |
T |
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| Q |
201 |
aataacccttcttgtcaataca |
222 |
Q |
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||||||||| |||||||||||| |
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| T |
19135877 |
aataaccctccttgtcaataca |
19135856 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 171 - 220
Target Start/End: Original strand, 44838281 - 44838330
Alignment:
| Q |
171 |
ctttttgattttgtttgggtacaattctacaataacccttcttgtcaata |
220 |
Q |
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|||||||| ||||||||||||||||| |||||||| ||| |||||||||| |
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| T |
44838281 |
ctttttgactttgtttgggtacaattttacaataatcctccttgtcaata |
44838330 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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