View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16562_low_22 (Length: 252)
Name: NF16562_low_22
Description: NF16562
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16562_low_22 |
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Alignment Details
Target: chr8 (Bit Score: 218; Significance: 1e-120; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 21 - 242
Target Start/End: Complemental strand, 17999569 - 17999348
Alignment:
| Q |
21 |
tgcgcaacatcctccgaatcaatgaaggaatttgccatttcaaaactcggggagaaaattaagtcatattcaggttatttcgctaaaaatcaagaccaat |
120 |
Q |
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| T |
17999569 |
tgcgcaacatcctccgaatcaatgaaggaatttgccatttcaaaactcggggcgaaaattaagtcatattcaggttatttcgctaaaaatcaagaccaat |
17999470 |
T |
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| Q |
121 |
atgtagtagaagaagtaaggaaaattgcagacaaaggagtaatgtgtcatcgaatgaatttcgagaaagttgtattttattgtcaccaagtgaatgcatc |
220 |
Q |
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| T |
17999469 |
atgtagtagaagaagtaaggaaaattgcagacaaaggagtaatgtgtcatcgaatgaatttcgagaaagttgtattttattgtcaccaagtgaatgcatc |
17999370 |
T |
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| Q |
221 |
aacaacttacatggtccctttg |
242 |
Q |
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| T |
17999369 |
aacaacttacatggtccctttg |
17999348 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 105 - 235
Target Start/End: Original strand, 17004198 - 17004328
Alignment:
| Q |
105 |
aaaaatcaagaccaatatgtagtagaagaagtaaggaaaattgcagacaaaggagtaatgtgtcatcgaatgaatttcgagaaagttgtattttattgtc |
204 |
Q |
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| T |
17004198 |
aaaaataaggaccaatatgtggtggatgaagtgaaaaaaattggagacaaagtggtgatgtgtcatagattaaatttcaaaaatgttgtattttattgtc |
17004297 |
T |
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| Q |
205 |
accaagtgaatgcatcaacaacttacatggt |
235 |
Q |
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| T |
17004298 |
accaagttaatgcaactacaacttacatggt |
17004328 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 106 - 241
Target Start/End: Complemental strand, 17986697 - 17986562
Alignment:
| Q |
106 |
aaaatcaagaccaatatgtagtagaagaagtaaggaaaattgcagacaaaggagtaatgtgtcatcgaatgaatttcgagaaagttgtattttattgtca |
205 |
Q |
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| T |
17986697 |
aaaaccaagaccaatatatagtacaggaagtgaagaaaattggagacaaagccgtgatgtgtcataaactaaatttcgatcaagttgtattttattgcca |
17986598 |
T |
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| Q |
206 |
ccaagtgaatgcatcaacaacttacatggtcccttt |
241 |
Q |
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| T |
17986597 |
ccaagtcaatgcaacatcaacatacatagttccttt |
17986562 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 103 - 235
Target Start/End: Complemental strand, 17956538 - 17956406
Alignment:
| Q |
103 |
ctaaaaatcaagaccaatatgtagtagaagaagtaaggaaaattgcagacaaaggagtaatgtgtcatcgaatgaatttcgagaaagttgtattttattg |
202 |
Q |
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| T |
17956538 |
ctaaaaatcatgaccaatatgtggtggaagaagtgaataaaataggagacaacgcagtgatgtgccatagattgaattttaaaaaagttctattctattg |
17956439 |
T |
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| Q |
203 |
tcaccaagtgaatgcatcaacaacttacatggt |
235 |
Q |
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| T |
17956438 |
ccaccaagtcaatgcgacaacaacttacatggt |
17956406 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 163 - 235
Target Start/End: Complemental strand, 17117392 - 17117320
Alignment:
| Q |
163 |
tgtgtcatcgaatgaatttcgagaaagttgtattttattgtcaccaagtgaatgcatcaacaacttacatggt |
235 |
Q |
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| T |
17117392 |
tgtgtcatcgaatgaatttcaaaaatattatattttcttgtcaccaagttaatgcaacaacagtttacatggt |
17117320 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 140 - 235
Target Start/End: Original strand, 17107415 - 17107510
Alignment:
| Q |
140 |
gaaaattgcagacaaaggagtaatgtgtcatcgaatgaatttcgagaaagttgtattttattgtcaccaagtgaatgcatcaacaacttacatggt |
235 |
Q |
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| T |
17107415 |
gaaaattggagacaaagcagtgatgtgtcatagattgaatttcaaagacatggtattttattgccaccaagttaatgcaacaacagtttacatggt |
17107510 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 114 - 212
Target Start/End: Complemental strand, 17258287 - 17258189
Alignment:
| Q |
114 |
gaccaatatgtagtagaagaagtaaggaaaattgcagacaaaggagtaatgtgtcatcgaatgaatttcgagaaagttgtattttattgtcaccaagtg |
212 |
Q |
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| T |
17258287 |
gaccaatatgtggtggaggaagtgaaaaaagttggagacaatgcagtgatgtgtcatagattgaatttcgaaaaagttgtattcaattgccaccaagtg |
17258189 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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