View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16562_low_23 (Length: 250)
Name: NF16562_low_23
Description: NF16562
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16562_low_23 |
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Alignment Details
Target: chr7 (Bit Score: 223; Significance: 1e-123; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 40577376 - 40577142
Alignment:
| Q |
1 |
tcaactttctccaattttggcacttctgtatctaaatccgttaatgggtatgttttttgtcactccataaatttgaagttgttgagtttatcttcttttg |
100 |
Q |
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| T |
40577376 |
tcaactttctccaaatttggcacttctgtatctaaatccgttaatgggtatgttttttgtcactccataattttgaagttgttgagtttatcttcttttg |
40577277 |
T |
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| Q |
101 |
gcactcctggatttgtagtttgagattatttgagttatttcttgggagttttttctcactccataatccgagattttggcacttatggatttgtagtttg |
200 |
Q |
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| T |
40577276 |
gcactcctggatttgtagtttgaggttatttgagttatttcttgggagttttttctcactccataatccgagattttggcacttatggatttgtagtttg |
40577177 |
T |
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| Q |
201 |
ggttgatgatgaatgtttaatatttttcttttgat |
235 |
Q |
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| T |
40577176 |
ggttgatgatgaatgtttaatatttttcttttgat |
40577142 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 22370328 - 22370397
Alignment:
| Q |
1 |
tcaactttctccaattttggcacttctgtatctaaatccgttaatgggtatgttttttgtcactccataa |
70 |
Q |
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| T |
22370328 |
tcaactttctccaattttggcacttctgcgtctaaatccgttaatgagtatgtttcttatcactccataa |
22370397 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 198 - 235
Target Start/End: Original strand, 42445487 - 42445524
Alignment:
| Q |
198 |
ttgggttgatgatgaatgtttaatatttttcttttgat |
235 |
Q |
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| T |
42445487 |
ttgggttgatgatgaatgtttaatgtttttcttttgat |
42445524 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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