View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16562_low_3 (Length: 450)
Name: NF16562_low_3
Description: NF16562
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16562_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 329; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 18 - 438
Target Start/End: Original strand, 36450460 - 36450900
Alignment:
| Q |
18 |
agaactaattcttgatttgtacagaacataaaccattttccaacatttggaaagaagaaaagaccactggttactgctttgcttagtgaaatattcggat |
117 |
Q |
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| T |
36450460 |
agaactaattcttgatttgtacagaacataaaccattttccaacatttggaaagaagaaaagaccactggttactgctttgcttagtgaaatattcggat |
36450559 |
T |
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| Q |
118 |
cgatgtagtacctttttaaaatatgtgtatctttccataattaattttaggaaaggggttctgataatccgaagtttgaccgtgatataatgaaacattt |
217 |
Q |
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| T |
36450560 |
----gcagtacctttttaaaatatgtgtatctttccataattaattttaggaaaggggttctgataatccgaagtttgaccgtgatataatgaaacattt |
36450655 |
T |
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| Q |
218 |
taatcaaccacacaccattcaaagattcatttatgaaacatctttttaactgcaataatataagctaaaacacaacatg----------------ccaag |
301 |
Q |
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| T |
36450656 |
taatcaaccacacaccattcaaagattcatttatgaaacatctttttaactgcaataatataagctaaaacacaacatgccaaataaaagatgtaccaag |
36450755 |
T |
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| Q |
302 |
catttgttccatgtcacacctctccaattagtgcatgcatgcatctggttctttctacccttcctg-cccctaatatgcttcaatcatgataagttcaac |
400 |
Q |
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| T |
36450756 |
catttgttccatgtcacacctctccaattagtgcatgcatgcatctgattctttctacccttgctgccccctaatatgcttcaatcatgataagttcaac |
36450855 |
T |
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| Q |
401 |
tttttgaaaaactaat-------tacagcatagcaaattcatctc |
438 |
Q |
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| T |
36450856 |
tttttgaaaaactaattagtaagtacagcatagcaaattcatctc |
36450900 |
T |
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