View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16562_low_30 (Length: 222)
Name: NF16562_low_30
Description: NF16562
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16562_low_30 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 34573304 - 34573525
Alignment:
| Q |
1 |
gaatccaacacttaaatgtcaaaaacaacaagcattgaaatattgttagcgtgtttataggtatgacttaatcttcaatggcaacaactccaaattatta |
100 |
Q |
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| T |
34573304 |
gaatccaacacttaaatgtcaaaaacaacaagcattgaaatattgttagcgtgtttataggcatgacttaatcttcaatggcaacatctccaaattatta |
34573403 |
T |
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| Q |
101 |
gctgaattcaaggagaatgttacgacacagtttgaaatatatggatctgatatcttacttattggccactgaggttaaacaaatgtctgaagaattctaa |
200 |
Q |
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| T |
34573404 |
gctgaattcaaggagaatgttacgacacaatttgaaatacatggatctgatatcttacttattggccactgaggttaaacaaatgtctgaagaattctaa |
34573503 |
T |
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| Q |
201 |
aatgaaaacttgtaaaccaatc |
222 |
Q |
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| T |
34573504 |
aatgaaaacttgtaaaccaatc |
34573525 |
T |
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Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 38500315 - 38500355
Alignment:
| Q |
1 |
gaatccaacacttaaatgtcaaaaacaacaagcattgaaat |
41 |
Q |
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| T |
38500315 |
gaatccaacacttatatgtcaaaaacaacaagcatggaaat |
38500355 |
T |
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