View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16562_low_31 (Length: 215)

Name: NF16562_low_31
Description: NF16562
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16562_low_31
NF16562_low_31
[»] chr4 (11 HSPs)
chr4 (11-199)||(30469094-30469286)
chr4 (129-200)||(8955779-8955850)
chr4 (127-199)||(39482066-39482138)
chr4 (126-200)||(45590945-45591019)
chr4 (143-200)||(33288421-33288478)
chr4 (126-199)||(49162292-49162365)
chr4 (136-200)||(36971251-36971315)
chr4 (152-199)||(50774084-50774131)
chr4 (122-198)||(34334540-34334617)
chr4 (144-195)||(26025546-26025597)
chr4 (151-199)||(33108923-33108971)
[»] chr2 (8 HSPs)
chr2 (123-200)||(15233958-15234035)
chr2 (126-200)||(41252619-41252693)
chr2 (122-200)||(44104542-44104620)
chr2 (126-199)||(43040849-43040922)
chr2 (136-200)||(35792917-35792981)
chr2 (144-199)||(21727876-21727931)
chr2 (145-198)||(31903400-31903453)
chr2 (141-199)||(41643098-41643156)
[»] chr3 (21 HSPs)
chr3 (124-200)||(18997170-18997246)
chr3 (124-200)||(18999709-18999785)
chr3 (126-200)||(41349371-41349445)
chr3 (126-199)||(1351996-1352069)
chr3 (121-200)||(29014685-29014764)
chr3 (126-200)||(32677477-32677551)
chr3 (126-200)||(36737834-36737908)
chr3 (126-200)||(39518610-39518684)
chr3 (126-200)||(39528952-39529026)
chr3 (126-199)||(39806979-39807052)
chr3 (126-200)||(29371538-29371612)
chr3 (126-200)||(32840152-32840226)
chr3 (127-199)||(22157462-22157534)
chr3 (126-199)||(38855521-38855594)
chr3 (127-199)||(21974353-21974425)
chr3 (127-199)||(21996784-21996856)
chr3 (154-199)||(55367756-55367801)
chr3 (140-200)||(28228638-28228701)
chr3 (126-195)||(840780-840849)
chr3 (123-159)||(32677721-32677757)
chr3 (123-159)||(41349615-41349651)
[»] chr8 (10 HSPs)
chr8 (125-200)||(45334275-45334350)
chr8 (122-200)||(25106414-25106492)
chr8 (126-200)||(33837729-33837803)
chr8 (125-200)||(28379150-28379225)
chr8 (122-200)||(2508792-2508870)
chr8 (126-200)||(9740189-9740263)
chr8 (126-199)||(13469508-13469581)
chr8 (141-200)||(2626253-2626312)
chr8 (126-200)||(38495472-38495546)
chr8 (126-191)||(32183481-32183546)
[»] chr7 (20 HSPs)
chr7 (126-200)||(17904366-17904440)
chr7 (126-200)||(6387692-6387766)
chr7 (126-200)||(29890826-29890900)
chr7 (126-197)||(37179331-37179402)
chr7 (126-200)||(46467335-46467409)
chr7 (126-200)||(26770382-26770456)
chr7 (126-199)||(4405313-4405386)
chr7 (126-199)||(9332525-9332598)
chr7 (126-200)||(29427162-29427238)
chr7 (126-200)||(31502653-31502726)
chr7 (126-199)||(6389928-6390001)
chr7 (146-196)||(19523813-19523863)
chr7 (126-199)||(46690067-46690140)
chr7 (163-200)||(41921892-41921929)
chr7 (144-200)||(31858110-31858166)
chr7 (144-195)||(33974702-33974753)
chr7 (144-195)||(48049210-48049261)
chr7 (126-199)||(9215463-9215536)
chr7 (123-199)||(9876467-9876542)
chr7 (144-199)||(7839260-7839315)
[»] chr5 (10 HSPs)
chr5 (126-200)||(12398946-12399020)
chr5 (126-200)||(29875157-29875231)
chr5 (126-200)||(42757805-42757879)
chr5 (126-199)||(34208742-34208815)
chr5 (124-200)||(4695160-4695236)
chr5 (126-200)||(23090501-23090575)
chr5 (136-199)||(4145898-4145961)
chr5 (126-199)||(22645909-22645982)
chr5 (152-199)||(3077801-3077848)
chr5 (146-199)||(19574890-19574943)
[»] chr1 (14 HSPs)
chr1 (126-200)||(46220462-46220536)
chr1 (126-200)||(47669322-47669396)
chr1 (127-200)||(1236071-1236144)
chr1 (129-200)||(9831706-9831777)
chr1 (128-200)||(3384597-3384669)
chr1 (126-200)||(48565020-48565094)
chr1 (126-199)||(10737701-10737774)
chr1 (126-197)||(8889649-8889720)
chr1 (141-200)||(18127053-18127112)
chr1 (141-199)||(4055688-4055746)
chr1 (124-199)||(39241356-39241431)
chr1 (152-200)||(4817472-4817520)
chr1 (126-195)||(37875727-37875796)
chr1 (126-159)||(46220259-46220292)
[»] chr6 (9 HSPs)
chr6 (126-200)||(32274637-32274711)
chr6 (126-200)||(2543284-2543358)
chr6 (126-199)||(27312114-27312188)
chr6 (126-190)||(8504733-8504797)
chr6 (123-199)||(29452539-29452615)
chr6 (136-199)||(5008335-5008398)
chr6 (140-199)||(7156251-7156310)
chr6 (126-199)||(31170990-31171063)
chr6 (125-195)||(18742154-18742224)
[»] scaffold0103 (1 HSPs)
scaffold0103 (136-199)||(44822-44885)


Alignment Details
Target: chr4 (Bit Score: 136; Significance: 4e-71; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 11 - 199
Target Start/End: Original strand, 30469094 - 30469286
Alignment:
Q  11 tagcataggagagattttgctttcttccttctccctctcacctcttcccctttctaacaaataaaccagacaacttactttaaagtatttca----atct 106  Q
    ||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    ||||    
T  30469094 tagcataagagagattttggtttcttccttctccctctcacctcttcccctttctaacaaataaaccagacaacttactttaaaatatttcattccatct 30469193  T
Q  107 cactgtcctttatccatattactccctctattccttttcttttgctgttttagctcttgacacaagttttaaggagtaattaaagtatataaa 199  Q
    || ||||||||||||||||||||||||  ||| ||||||||||| ||||||| |||||||||||||||||||| |||||||||||||||||||    
T  30469194 cattgtcctttatccatattactcccttcatttcttttcttttgatgttttaactcttgacacaagttttaagaagtaattaaagtatataaa 30469286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 129 - 200
Target Start/End: Original strand, 8955779 - 8955850
Alignment:
Q  129 tccctctattccttttcttttgctgttttagctcttgacacaagttttaaggagtaattaaagtatataaac 200  Q
    |||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  8955779 tccctccattccttttcttttgatgttttagctcttgacacaagttttaaggagtaattaaagtatataaac 8955850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 127 - 199
Target Start/End: Complemental strand, 39482138 - 39482066
Alignment:
Q  127 actccctctattccttttcttttgctgttttagctcttgacacaagttttaaggagtaattaaagtatataaa 199  Q
    |||||||| ||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  39482138 actccctccatttcttttcttttgatgttttagctcttgacacaagttttaaggagtaattaaagtatataaa 39482066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 126 - 200
Target Start/End: Complemental strand, 45591019 - 45590945
Alignment:
Q  126 tactccctctattccttttcttttgctgttttagctcttgacacaagttttaaggagtaattaaagtatataaac 200  Q
    ||||||||| |||| |||||||||| ||||||||||||||||| ||||| |||||||||||||||||||||||||    
T  45591019 tactccctccattcattttcttttgatgttttagctcttgacataagttgtaaggagtaattaaagtatataaac 45590945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 143 - 200
Target Start/End: Original strand, 33288421 - 33288478
Alignment:
Q  143 ttcttttgctgttttagctcttgacacaagttttaaggagtaattaaagtatataaac 200  Q
    |||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||    
T  33288421 ttcttttgatgttttagctattgacacaagttttaaggagtaattaaagtatataaac 33288478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 126 - 199
Target Start/End: Complemental strand, 49162365 - 49162292
Alignment:
Q  126 tactccctctattccttttcttttgctgttttagctcttgacacaagttttaaggagtaattaaagtatataaa 199  Q
    ||||||||| ||||| ||||||||| |||||||||| ||| |||||||||||| ||||||||||||||||||||    
T  49162365 tactccctccattccctttcttttgatgttttagctattggcacaagttttaaagagtaattaaagtatataaa 49162292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 136 - 200
Target Start/End: Complemental strand, 36971315 - 36971251
Alignment:
Q  136 attccttttcttttgctgttttagctcttgacacaagttttaaggagtaattaaagtatataaac 200  Q
    |||| |||||||||| |||||||||| ||||||||||||||||| ||||||||||||||||||||    
T  36971315 attcattttcttttgatgttttagcttttgacacaagttttaagaagtaattaaagtatataaac 36971251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 152 - 199
Target Start/End: Original strand, 50774084 - 50774131
Alignment:
Q  152 tgttttagctcttgacacaagttttaaggagtaattaaagtatataaa 199  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  50774084 tgttttagctcttgacacaagttttaaggagtaattaaagtatataaa 50774131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 122 - 198
Target Start/End: Complemental strand, 34334617 - 34334540
Alignment:
Q  122 atattactccctctattcctttt-cttttgctgttttagctcttgacacaagttttaaggagtaattaaagtatataa 198  Q
    ||||||||||||| ||||||||| |||||| || || | ||||| |||||||| ||||||||||||||||||||||||    
T  34334617 atattactccctccattcctttttcttttgatgattaaactcttaacacaagtcttaaggagtaattaaagtatataa 34334540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 144 - 195
Target Start/End: Original strand, 26025546 - 26025597
Alignment:
Q  144 tcttttgctgttttagctcttgacacaagttttaaggagtaattaaagtata 195  Q
    ||||||| |||||||||||||| ||||||| ||| |||||||||||||||||    
T  26025546 tcttttgatgttttagctcttggcacaagtcttagggagtaattaaagtata 26025597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 151 - 199
Target Start/End: Original strand, 33108923 - 33108971
Alignment:
Q  151 ctgttttagctcttgacacaagttttaaggagtaattaaagtatataaa 199  Q
    |||||||| |||||||||||||| ||||| | |||||||| ||||||||    
T  33108923 ctgttttaactcttgacacaagtcttaagaaataattaaattatataaa 33108971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 70; Significance: 1e-31; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 123 - 200
Target Start/End: Complemental strand, 15234035 - 15233958
Alignment:
Q  123 tattactccctctattccttttcttttgctgttttagctcttgacacaagttttaaggagtaattaaagtatataaac 200  Q
    |||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  15234035 tattactccctccattccttttcttttgatgttttagctcttgacacaagttttaaggagtaattaaagtatataaac 15233958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 126 - 200
Target Start/End: Complemental strand, 41252693 - 41252619
Alignment:
Q  126 tactccctctattccttttcttttgctgttttagctcttgacacaagttttaaggagtaattaaagtatataaac 200  Q
    ||||| ||| |||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  41252693 tactctctccattcattttcttttgatgttttagctcttgacacaagttttaaggagtaattaaagtatataaac 41252619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 122 - 200
Target Start/End: Original strand, 44104542 - 44104620
Alignment:
Q  122 atattactccctctattccttttcttttgctgttttagctcttgacacaagttttaaggagtaattaaagtatataaac 200  Q
    ||||||||||||| ||||||||||||||| ||||||| || |||||| |||||||||||||||||||||||||||||||    
T  44104542 atattactccctccattccttttcttttgatgttttaacttttgacataagttttaaggagtaattaaagtatataaac 44104620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 126 - 199
Target Start/End: Original strand, 43040849 - 43040922
Alignment:
Q  126 tactccctctattccttttcttttgctgttttagctcttgacacaagttttaaggagtaattaaagtatataaa 199  Q
    ||||||||| ||||||||||||||| |||||||||| ||| |||||||||||||||||||||||| ||||||||    
T  43040849 tactccctccattccttttcttttgatgttttagctattggcacaagttttaaggagtaattaaaatatataaa 43040922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 136 - 200
Target Start/End: Original strand, 35792917 - 35792981
Alignment:
Q  136 attccttttcttttgctgttttagctcttgacacaagttttaaggagtaattaaagtatataaac 200  Q
    ||||||||||||||| ||||||| ||||||||| |||||||||||||||||||||||||||||||    
T  35792917 attccttttcttttgatgttttaactcttgacataagttttaaggagtaattaaagtatataaac 35792981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 144 - 199
Target Start/End: Complemental strand, 21727931 - 21727876
Alignment:
Q  144 tcttttgctgttttagctcttgacacaagttttaaggagtaattaaagtatataaa 199  Q
    ||||||| |||||||||||||| ||||||| ||||||||||||| |||||||||||    
T  21727931 tcttttgatgttttagctcttggcacaagtcttaaggagtaattgaagtatataaa 21727876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 145 - 198
Target Start/End: Original strand, 31903400 - 31903453
Alignment:
Q  145 cttttgctgttttagctcttgacacaagttttaaggagtaattaaagtatataa 198  Q
    |||||| |||||||||| ||| ||| | ||||||||||||||||||||||||||    
T  31903400 cttttgatgttttagcttttggcacgacttttaaggagtaattaaagtatataa 31903453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 141 - 199
Target Start/End: Complemental strand, 41643156 - 41643098
Alignment:
Q  141 ttttcttttgctgttttagctcttgacacaagttttaaggagtaattaaagtatataaa 199  Q
    |||||||||| |||||||  ||||| ||||  |||||| ||||||||||||||||||||    
T  41643156 ttttcttttgatgttttaattcttggcacacattttaaagagtaattaaagtatataaa 41643098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 69; Significance: 4e-31; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 124 - 200
Target Start/End: Complemental strand, 18997246 - 18997170
Alignment:
Q  124 attactccctctattccttttcttttgctgttttagctcttgacacaagttttaaggagtaattaaagtatataaac 200  Q
    ||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  18997246 attactccctccattccttttcttttgatgttttagctcttgacacaagttttaaggagtaattaaagtatataaac 18997170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 124 - 200
Target Start/End: Complemental strand, 18999785 - 18999709
Alignment:
Q  124 attactccctctattccttttcttttgctgttttagctcttgacacaagttttaaggagtaattaaagtatataaac 200  Q
    ||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  18999785 attactccctccattccttttcttttgatgttttagctcttgacacaagttttaaggagtaattaaagtatataaac 18999709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 126 - 200
Target Start/End: Original strand, 41349371 - 41349445
Alignment:
Q  126 tactccctctattccttttcttttgctgttttagctcttgacacaagttttaaggagtaattaaagtatataaac 200  Q
    ||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  41349371 tactccctccattccttttcttttgatgttttagctcttgacacaagttttaaggagtaattaaagtatataaac 41349445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 126 - 199
Target Start/End: Original strand, 1351996 - 1352069
Alignment:
Q  126 tactccctctattccttttcttttgctgttttagctcttgacacaagttttaaggagtaattaaagtatataaa 199  Q
    ||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  1351996 tactccctccattccttttcttttgatgttttagctcttgacacaagttttaaggagtaattaaagtatataaa 1352069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 121 - 200
Target Start/End: Original strand, 29014685 - 29014764
Alignment:
Q  121 catattactccctctattccttttcttttgctgttttagctcttgacacaagttttaaggagtaattaaagtatataaac 200  Q
    |||| ||||||||| ||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||    
T  29014685 cataatactccctccattccttttcttttgatgttttagctcttgacacaagttttaagaagtaattaaagtatataaac 29014764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 126 - 200
Target Start/End: Original strand, 32677477 - 32677551
Alignment:
Q  126 tactccctctattccttttcttttgctgttttagctcttgacacaagttttaaggagtaattaaagtatataaac 200  Q
    ||||||||| |||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  32677477 tactccctccattcattttcttttgatgttttagctcttgacacaagttttaaggagtaattaaagtatataaac 32677551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 126 - 200
Target Start/End: Original strand, 36737834 - 36737908
Alignment:
Q  126 tactccctctattccttttcttttgctgttttagctcttgacacaagttttaaggagtaattaaagtatataaac 200  Q
    ||||||||| ||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||    
T  36737834 tactccctccattccttttcttttgatgttttagctcttgacacaagttttaaggaataattaaagtatataaac 36737908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 126 - 200
Target Start/End: Complemental strand, 39518684 - 39518610
Alignment:
Q  126 tactccctctattccttttcttttgctgttttagctcttgacacaagttttaaggagtaattaaagtatataaac 200  Q
    ||||||||| ||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||    
T  39518684 tactccctccattccttttcttttgatgttttagctcttgacacaagttttaatgagtaattaaagtatataaac 39518610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 126 - 200
Target Start/End: Complemental strand, 39529026 - 39528952
Alignment:
Q  126 tactccctctattccttttcttttgctgttttagctcttgacacaagttttaaggagtaattaaagtatataaac 200  Q
    ||||||||| ||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||    
T  39529026 tactccctccattccttttcttttgatgttttagcttttgacacaagttttaaggagtaattaaagtatataaac 39528952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 126 - 199
Target Start/End: Original strand, 39806979 - 39807052
Alignment:
Q  126 tactccctctattccttttcttttgctgttttagctcttgacacaagttttaaggagtaattaaagtatataaa 199  Q
    ||||||||  ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  39806979 tactcccttcattccttttcttttgatgttttagctcttgacacaagttttaaggagtaattaaagtatataaa 39807052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 126 - 200
Target Start/End: Original strand, 29371538 - 29371612
Alignment:
Q  126 tactccctctattccttttcttttgctgttttagctcttgacacaagttttaaggagtaattaaagtatataaac 200  Q
    ||||||||| |||| |||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||    
T  29371538 tactccctccattcattttcttttgatgttttagctcttgacacaaattttaaggagtaattaaagtatataaac 29371612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 126 - 200
Target Start/End: Complemental strand, 32840226 - 32840152
Alignment:
Q  126 tactccctctattccttttcttttgctgttttagctcttgacacaagttttaaggagtaattaaagtatataaac 200  Q
    ||||||||| |||| |||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||    
T  32840226 tactccctccattcattttcttttgatattttagctcttgacacaagttttaaggagtaattaaagtatataaac 32840152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 127 - 199
Target Start/End: Complemental strand, 22157534 - 22157462
Alignment:
Q  127 actccctctattccttttcttttgctgttttagctcttgacacaagttttaaggagtaattaaagtatataaa 199  Q
    |||||||| |||  |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  22157534 actccctccatttattttcttttgatgttttagctcttgacacaagttttaaggagtaattaaagtatataaa 22157462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 126 - 199
Target Start/End: Complemental strand, 38855594 - 38855521
Alignment:
Q  126 tactccctctattccttttcttttgctgttttagctcttgacacaagttttaaggagtaattaaagtatataaa 199  Q
    ||||||||| ||||||||||||||| |||||||||| ||| |||||||||||||||||||||||| ||||||||    
T  38855594 tactccctccattccttttcttttgatgttttagctattggcacaagttttaaggagtaattaaaatatataaa 38855521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 127 - 199
Target Start/End: Complemental strand, 21974425 - 21974353
Alignment:
Q  127 actccctctattccttttcttttgctgttttagctcttgacacaagttttaaggagtaattaaagtatataaa 199  Q
    |||||||| |||  |||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||    
T  21974425 actccctccatttattttcttttgatgttttaactcttgacacaagttttaaggagtaattaaagtatataaa 21974353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 127 - 199
Target Start/End: Complemental strand, 21996856 - 21996784
Alignment:
Q  127 actccctctattccttttcttttgctgttttagctcttgacacaagttttaaggagtaattaaagtatataaa 199  Q
    |||||||| |||  |||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||    
T  21996856 actccctccatttattttcttttgatgttttaactcttgacacaagttttaaggagtaattaaagtatataaa 21996784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 154 - 199
Target Start/End: Complemental strand, 55367801 - 55367756
Alignment:
Q  154 ttttagctcttgacacaagttttaaggagtaattaaagtatataaa 199  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||    
T  55367801 ttttagctcttgatacaagttttaaggagtaattaaagtatataaa 55367756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 140 - 200
Target Start/End: Complemental strand, 28228701 - 28228638
Alignment:
Q  140 cttttcttttgctgttttagctcttgacacaagttttaaggagta---attaaagtatataaac 200  Q
    ||||| ||||| |||||| ||||||||||||||||||||| ||||   ||||||||||||||||    
T  28228701 ctttttttttgatgttttggctcttgacacaagttttaagaagtaattattaaagtatataaac 28228638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 126 - 195
Target Start/End: Complemental strand, 840849 - 840780
Alignment:
Q  126 tactccctctattccttttcttttgctgttttagctcttgacacaagttttaaggagtaattaaagtata 195  Q
    ||||||||| |||  || ||||||| ||||||| |||||| ||||||| ||||| | |||||||||||||    
T  840849 tactccctccattttttatcttttgatgttttaactcttggcacaagtcttaagaaataattaaagtata 840780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 123 - 159
Target Start/End: Complemental strand, 32677757 - 32677721
Alignment:
Q  123 tattactccctctattccttttcttttgctgttttag 159  Q
    |||||||||||| ||||||||||||||| ||||||||    
T  32677757 tattactccctccattccttttcttttgatgttttag 32677721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 123 - 159
Target Start/End: Complemental strand, 41349651 - 41349615
Alignment:
Q  123 tattactccctctattccttttcttttgctgttttag 159  Q
    |||||||||||| ||||||||||||||| ||||||||    
T  41349651 tattactccctccattccttttcttttgatgttttag 41349615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 68; Significance: 2e-30; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 125 - 200
Target Start/End: Original strand, 45334275 - 45334350
Alignment:
Q  125 ttactccctctattccttttcttttgctgttttagctcttgacacaagttttaaggagtaattaaagtatataaac 200  Q
    |||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  45334275 ttactccctccattccttttcttttgatgttttagctcttgacacaagttttaaggagtaattaaagtatataaac 45334350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 122 - 200
Target Start/End: Complemental strand, 25106492 - 25106414
Alignment:
Q  122 atattactccctctattccttttcttttgctgttttagctcttgacacaagttttaaggagtaattaaagtatataaac 200  Q
    ||||||||||||| ||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||    
T  25106492 atattactccctccattccttttcttttgatgttttagcttttgacacaagttttaaggagtaattaaagtatataaac 25106414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 126 - 200
Target Start/End: Original strand, 33837729 - 33837803
Alignment:
Q  126 tactccctctattccttttcttttgctgttttagctcttgacacaagttttaaggagtaattaaagtatataaac 200  Q
    ||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  33837729 tactccctccattccttttcttttgatgttttagctcttgacacaagttttaaggagtaattaaagtatataaac 33837803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 125 - 200
Target Start/End: Complemental strand, 28379225 - 28379150
Alignment:
Q  125 ttactccctctattccttttcttttgctgttttagctcttgacacaagttttaaggagtaattaaagtatataaac 200  Q
    |||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||    
T  28379225 ttactccctccattccttttcttttgatgttttagctcttgacacaagttttaaggagtgattaaagtatataaac 28379150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 122 - 200
Target Start/End: Original strand, 2508792 - 2508870
Alignment:
Q  122 atattactccctctattccttttcttttgctgttttagctcttgacacaagttttaaggagtaattaaagtatataaac 200  Q
    |||||||||| || ||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  2508792 atattactccatcaatttcttttcttttgatgttttagctcttgacacaagttttaaggagtaattaaagtatataaac 2508870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 126 - 200
Target Start/End: Complemental strand, 9740263 - 9740189
Alignment:
Q  126 tactccctctattccttttcttttgctgttttagctcttgacacaagttttaaggagtaattaaagtatataaac 200  Q
    ||||||||| ||||||||||||||| ||||||| |||||||||||||||||| ||||||||||||||||||||||    
T  9740263 tactccctccattccttttcttttgatgttttaactcttgacacaagttttagggagtaattaaagtatataaac 9740189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 126 - 199
Target Start/End: Original strand, 13469508 - 13469581
Alignment:
Q  126 tactccctctattccttttcttttgctgttttagctcttgacacaagttttaaggagtaattaaagtatataaa 199  Q
    |||||| || ||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||    
T  13469508 tactccttccattccttttcttttgatgttttaactcttgacacaagttttaaggagtaattaaagtatataaa 13469581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 141 - 200
Target Start/End: Original strand, 2626253 - 2626312
Alignment:
Q  141 ttttcttttgctgttttagctcttgacacaagttttaaggagtaattaaagtatataaac 200  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  2626253 ttttcttttgatgttttagctcttgacacaagttttaaggagtaattaaagtatataaac 2626312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 126 - 200
Target Start/End: Original strand, 38495472 - 38495546
Alignment:
Q  126 tactccctctattccttttcttttgctgttttagctcttgacacaagttttaaggagtaattaaagtatataaac 200  Q
    ||||||||| |||| |||||||||| ||||||||||||||||| ||||||||||||||||||||| |||||||||    
T  38495472 tactccctccattcattttcttttgatgttttagctcttgacataagttttaaggagtaattaaaatatataaac 38495546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 126 - 191
Target Start/End: Original strand, 32183481 - 32183546
Alignment:
Q  126 tactccctctattccttttcttttgctgttttagctcttgacacaagttttaaggagtaattaaag 191  Q
    ||||||||| |||  || ||||||| |||||||||||||| ||||||| |||||||||||||||||    
T  32183481 tactccctccattttttatcttttgatgttttagctcttggcacaagtcttaaggagtaattaaag 32183546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 67; Significance: 6e-30; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 126 - 200
Target Start/End: Complemental strand, 17904440 - 17904366
Alignment:
Q  126 tactccctctattccttttcttttgctgttttagctcttgacacaagttttaaggagtaattaaagtatataaac 200  Q
    ||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  17904440 tactccctccattccttttcttttgatgttttagctcttgacacaagttttaaggagtaattaaagtatataaac 17904366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 126 - 200
Target Start/End: Original strand, 6387692 - 6387766
Alignment:
Q  126 tactccctctattccttttcttttgctgttttagctcttgacacaagttttaaggagtaattaaagtatataaac 200  Q
    |||| |||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  6387692 tacttcctccattccttttcttttgatgttttagctcttgacacaagttttaaggagtaattaaagtatataaac 6387766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 126 - 200
Target Start/End: Original strand, 29890826 - 29890900
Alignment:
Q  126 tactccctctattccttttcttttgctgttttagctcttgacacaagttttaaggagtaattaaagtatataaac 200  Q
    ||||||||| ||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||    
T  29890826 tactccctccattccttttcttttgatgttttagcttttgacacaagttttaaggagtaattaaagtatataaac 29890900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 126 - 197
Target Start/End: Original strand, 37179331 - 37179402
Alignment:
Q  126 tactccctctattccttttcttttgctgttttagctcttgacacaagttttaaggagtaattaaagtatata 197  Q
    ||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||    
T  37179331 tactccctccattccttttcttttgatgttttagctcttgacacaagttttaaggagtaatgaaagtatata 37179402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 126 - 200
Target Start/End: Original strand, 46467335 - 46467409
Alignment:
Q  126 tactccctctattccttttcttttgctgttttagctcttgacacaagttttaaggagtaattaaagtatataaac 200  Q
    ||||||||| ||||||||||||||| ||||||| |||||||||||| ||||||||||||||||||||||||||||    
T  46467335 tactccctccattccttttcttttgatgttttaactcttgacacaaattttaaggagtaattaaagtatataaac 46467409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 126 - 200
Target Start/End: Complemental strand, 26770456 - 26770382
Alignment:
Q  126 tactccctctattccttttcttttgctgttttagctcttgacacaagttttaaggagtaattaaagtatataaac 200  Q
    ||||||||| |||| |||||||||| |||||||  ||||||||||||||||||||||||||||||||||||||||    
T  26770456 tactccctccattcattttcttttgatgttttaattcttgacacaagttttaaggagtaattaaagtatataaac 26770382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 126 - 199
Target Start/End: Complemental strand, 4405386 - 4405313
Alignment:
Q  126 tactccctctattccttttcttttgctgttttagctcttgacacaagttttaaggagtaattaaagtatataaa 199  Q
    ||||||||| ||||||||||||||| |||||||||| ||| |||||||||||||||||||||||| ||||||||    
T  4405386 tactccctccattccttttcttttgatgttttagctattggcacaagttttaaggagtaattaaaatatataaa 4405313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 126 - 199
Target Start/End: Complemental strand, 9332598 - 9332525
Alignment:
Q  126 tactccctctattccttttcttttgctgttttagctcttgacacaagttttaaggagtaattaaagtatataaa 199  Q
    ||||||||| ||| ||||||||||| | ||||||||||| ||||||||||||||||||||||||||||||||||    
T  9332598 tactccctccatttcttttcttttgatattttagctcttaacacaagttttaaggagtaattaaagtatataaa 9332525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 126 - 200
Target Start/End: Original strand, 29427162 - 29427238
Alignment:
Q  126 tactccctct--attccttttcttttgctgttttagctcttgacacaagttttaaggagtaattaaagtatataaac 200  Q
    ||||||||||  |||| |||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||    
T  29427162 tactccctctccattcattttcttttgatgttttacctcttgacacaagttttaaggagtaattaaagtatataaac 29427238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 126 - 200
Target Start/End: Original strand, 31502653 - 31502726
Alignment:
Q  126 tactccctctattccttttcttttgctgttttagctcttgacacaagttttaaggagtaattaaagtatataaac 200  Q
    ||||||||| |||| |||||||||| |||||||||||||||  ||||||||||||||||||||||||||||||||    
T  31502653 tactccctccattc-ttttcttttgatgttttagctcttgatgcaagttttaaggagtaattaaagtatataaac 31502726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 126 - 199
Target Start/End: Complemental strand, 6390001 - 6389928
Alignment:
Q  126 tactccctctattccttttcttttgctgttttagctcttgacacaagttttaaggagtaattaaagtatataaa 199  Q
    ||||||||| |||| |||||||||| ||||||| |||||||||||||||||||| |||| ||||||||||||||    
T  6390001 tactccctcaattctttttcttttgatgttttaactcttgacacaagttttaagaagtagttaaagtatataaa 6389928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 146 - 196
Target Start/End: Original strand, 19523813 - 19523863
Alignment:
Q  146 ttttgctgttttagctcttgacacaagttttaaggagtaattaaagtatat 196  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  19523813 ttttgatgttttagctcttgacacaagttttaaggagtaattaaagtatat 19523863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 126 - 199
Target Start/End: Complemental strand, 46690140 - 46690067
Alignment:
Q  126 tactccctctattccttttcttttgctgttttagctcttgacacaagttttaaggagtaattaaagtatataaa 199  Q
    ||||||||| |||  || ||||||| |||||||||||||| ||||| | |||||||||||||||||||||||||    
T  46690140 tactccctccattttttatcttttgatgttttagctcttggcacaaatcttaaggagtaattaaagtatataaa 46690067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 163 - 200
Target Start/End: Original strand, 41921892 - 41921929
Alignment:
Q  163 ttgacacaagttttaaggagtaattaaagtatataaac 200  Q
    ||||||||||||||||||||||||||||||||||||||    
T  41921892 ttgacacaagttttaaggagtaattaaagtatataaac 41921929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 144 - 200
Target Start/End: Original strand, 31858110 - 31858166
Alignment:
Q  144 tcttttgctgttttagctcttgacacaagttttaaggagtaattaaagtatataaac 200  Q
    ||||||| ||||||| |||||||||||| | ||||||||||||||||| ||||||||    
T  31858110 tcttttgatgttttaactcttgacacaaatcttaaggagtaattaaagaatataaac 31858166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 144 - 195
Target Start/End: Complemental strand, 33974753 - 33974702
Alignment:
Q  144 tcttttgctgttttagctcttgacacaagttttaaggagtaattaaagtata 195  Q
    |||||||  ||||||||||||| ||||||| |||||||||||||||||||||    
T  33974753 tcttttgacgttttagctcttggcacaagtcttaaggagtaattaaagtata 33974702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 144 - 195
Target Start/End: Complemental strand, 48049261 - 48049210
Alignment:
Q  144 tcttttgctgttttagctcttgacacaagttttaaggagtaattaaagtata 195  Q
    ||||||| |||||||||||||| ||||||| ||||| |||||||||||||||    
T  48049261 tcttttgatgttttagctcttggcacaagtcttaagtagtaattaaagtata 48049210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 126 - 199
Target Start/End: Original strand, 9215463 - 9215536
Alignment:
Q  126 tactccctctattccttttcttttgctgttttagctcttgacacaagttttaaggagtaattaaagtatataaa 199  Q
    |||||||||||||  || ||||||| ||||||||||||||  |||| | ||||| ||||||||||||| |||||    
T  9215463 tactccctctattttttatcttttgatgttttagctcttggtacaaatcttaagaagtaattaaagtacataaa 9215536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 123 - 199
Target Start/End: Complemental strand, 9876542 - 9876467
Alignment:
Q  123 tattactccctctattccttttcttttgctgttttagctcttgacacaagttttaaggagtaattaaagtatataaa 199  Q
    ||||||| |||| |||| |||| ||||  |||||||||| ||| || ||||||||||||||||||||| ||||||||    
T  9876542 tattacttcctccattctttttttttta-tgttttagctattggcataagttttaaggagtaattaaaatatataaa 9876467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 144 - 199
Target Start/End: Complemental strand, 7839315 - 7839260
Alignment:
Q  144 tcttttgctgttttagctcttgacacaagttttaaggagtaattaaagtatataaa 199  Q
    ||||||| | |||||||| ||  ||||||| |||||||||||||||||||||||||    
T  7839315 tcttttgatattttagctgttatcacaagtattaaggagtaattaaagtatataaa 7839260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 67; Significance: 6e-30; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 126 - 200
Target Start/End: Original strand, 12398946 - 12399020
Alignment:
Q  126 tactccctctattccttttcttttgctgttttagctcttgacacaagttttaaggagtaattaaagtatataaac 200  Q
    ||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  12398946 tactccctccattccttttcttttgatgttttagctcttgacacaagttttaaggagtaattaaagtatataaac 12399020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 126 - 200
Target Start/End: Complemental strand, 29875231 - 29875157
Alignment:
Q  126 tactccctctattccttttcttttgctgttttagctcttgacacaagttttaaggagtaattaaagtatataaac 200  Q
    ||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  29875231 tactccctccattccttttcttttgatgttttagctcttgacacaagttttaaggagtaattaaagtatataaac 29875157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 126 - 200
Target Start/End: Original strand, 42757805 - 42757879
Alignment:
Q  126 tactccctctattccttttcttttgctgttttagctcttgacacaagttttaaggagtaattaaagtatataaac 200  Q
    ||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  42757805 tactccctccattccttttcttttgatgttttagctcttgacacaagttttaaggagtaattaaagtatataaac 42757879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 126 - 199
Target Start/End: Complemental strand, 34208815 - 34208742
Alignment:
Q  126 tactccctctattccttttcttttgctgttttagctcttgacacaagttttaaggagtaattaaagtatataaa 199  Q
    ||||||||| ||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  34208815 tactccctccattcctttttttttgatgttttagctcttgacacaagttttaaggagtaattaaagtatataaa 34208742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 124 - 200
Target Start/End: Original strand, 4695160 - 4695236
Alignment:
Q  124 attactccctctattccttttcttttgctgttttagctcttgacacaagttttaaggagtaattaaagtatataaac 200  Q
    ||||||||||| ||| ||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||    
T  4695160 attactccctccatttcttttcttttgatgttatagctcttgacacaagttttaaggagtaattaaagtatataaac 4695236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 126 - 200
Target Start/End: Complemental strand, 23090575 - 23090501
Alignment:
Q  126 tactccctctattccttttcttttgctgttttagctcttgacacaagttttaaggagtaattaaagtatataaac 200  Q
    ||||||||| ||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||| ||||    
T  23090575 tactccctccattccttttcttttgatgttttacctcttgacacaagttttaaggagtaattaaagtatacaaac 23090501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 136 - 199
Target Start/End: Complemental strand, 4145961 - 4145898
Alignment:
Q  136 attccttttcttttgctgttttagctcttgacacaagttttaaggagtaattaaagtatataaa 199  Q
    ||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||    
T  4145961 attccttttcttttgatgttttagttcttgacacaagttttaaggagtaattaaagtatataaa 4145898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 126 - 199
Target Start/End: Original strand, 22645909 - 22645982
Alignment:
Q  126 tactccctctattccttttcttttgctgttttagctcttgacacaagttttaaggagtaattaaagtatataaa 199  Q
    ||||||||| ||| ||||||||||  |||||||||||||| |||||||||||||||||||||||||||||||||    
T  22645909 tactccctcaatttcttttcttttaatgttttagctcttggcacaagttttaaggagtaattaaagtatataaa 22645982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 152 - 199
Target Start/End: Complemental strand, 3077848 - 3077801
Alignment:
Q  152 tgttttagctcttgacacaagttttaaggagtaattaaagtatataaa 199  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  3077848 tgttttagctcttgacacaagttttaaggagtaattaaagtatataaa 3077801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 146 - 199
Target Start/End: Complemental strand, 19574943 - 19574890
Alignment:
Q  146 ttttgctgttttagctcttgacacaagttttaaggagtaattaaagtatataaa 199  Q
    ||||| ||||||| |||||| ||||||| ||||| |||||||||||||||||||    
T  19574943 ttttgatgttttaactcttggcacaagtcttaagaagtaattaaagtatataaa 19574890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 67; Significance: 6e-30; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 126 - 200
Target Start/End: Complemental strand, 46220536 - 46220462
Alignment:
Q  126 tactccctctattccttttcttttgctgttttagctcttgacacaagttttaaggagtaattaaagtatataaac 200  Q
    ||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  46220536 tactccctccattccttttcttttgatgttttagctcttgacacaagttttaaggagtaattaaagtatataaac 46220462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 126 - 200
Target Start/End: Complemental strand, 47669396 - 47669322
Alignment:
Q  126 tactccctctattccttttcttttgctgttttagctcttgacacaagttttaaggagtaattaaagtatataaac 200  Q
    ||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  47669396 tactccctccattccttttcttttgatgttttagctcttgacacaagttttaaggagtaattaaagtatataaac 47669322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 127 - 200
Target Start/End: Original strand, 1236071 - 1236144
Alignment:
Q  127 actccctctattccttttcttttgctgttttagctcttgacacaagttttaaggagtaattaaagtatataaac 200  Q
    |||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  1236071 actccctccattccttttcttttgatgttttagctcttgacacaagttttaaggagtaattaaagtatataaac 1236144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 129 - 200
Target Start/End: Complemental strand, 9831777 - 9831706
Alignment:
Q  129 tccctctattccttttcttttgctgttttagctcttgacacaagttttaaggagtaattaaagtatataaac 200  Q
    |||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  9831777 tccctccattccttttcttttgatgttttagctcttgacacaagttttaaggagtaattaaagtatataaac 9831706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 128 - 200
Target Start/End: Original strand, 3384597 - 3384669
Alignment:
Q  128 ctccctctattccttttcttttgctgttttagctcttgacacaagttttaaggagtaattaaagtatataaac 200  Q
    ||||||| |||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  3384597 ctccctccattctttttcttttgatgttttagctcttgacacaagttttaaggagtaattaaagtatataaac 3384669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 126 - 200
Target Start/End: Complemental strand, 48565094 - 48565020
Alignment:
Q  126 tactccctctattccttttcttttgctgttttagctcttgacacaagttttaaggagtaattaaagtatataaac 200  Q
    ||||||||| ||||||||||||||| |||||| ||| ||||||||||||||||||||||||||||||||||||||    
T  48565094 tactccctccattccttttcttttgatgttttggcttttgacacaagttttaaggagtaattaaagtatataaac 48565020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 126 - 199
Target Start/End: Original strand, 10737701 - 10737774
Alignment:
Q  126 tactccctctattccttttcttttgctgttttagctcttgacacaagttttaaggagtaattaaagtatataaa 199  Q
    ||||||||| ||||||||||||||| ||||||||||||||| ||||||||||||||| ||||||||||||||||    
T  10737701 tactccctccattccttttcttttgatgttttagctcttgatacaagttttaaggagcaattaaagtatataaa 10737774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 126 - 197
Target Start/End: Complemental strand, 8889720 - 8889649
Alignment:
Q  126 tactccctctattccttttcttttgctgttttagctcttgacacaagttttaaggagtaattaaagtatata 197  Q
    ||||||||| ||||||||| ||||| |||||||||||||||||||||||||||| |||||||||||||||||    
T  8889720 tactccctccattccttttattttgatgttttagctcttgacacaagttttaagaagtaattaaagtatata 8889649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 141 - 200
Target Start/End: Complemental strand, 18127112 - 18127053
Alignment:
Q  141 ttttcttttgctgttttagctcttgacacaagttttaaggagtaattaaagtatataaac 200  Q
    |||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  18127112 tttttttttgatgttttagctcttgacacaagttttaaggagtaattaaagtatataaac 18127053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 141 - 199
Target Start/End: Complemental strand, 4055746 - 4055688
Alignment:
Q  141 ttttcttttgctgttttagctcttgacacaagttttaaggagtaattaaagtatataaa 199  Q
    |||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||    
T  4055746 ttttcttttgatgttttaactcttgacacaagttttaaggagtaattaaagtatataaa 4055688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 124 - 199
Target Start/End: Complemental strand, 39241431 - 39241356
Alignment:
Q  124 attactccctctattccttttcttttgctgttttagctcttgacacaagttttaaggagtaattaaagtatataaa 199  Q
    ||||||| ||| ||| ||||||||||| ||||||||||||||||| || ||||||| |||||||||||||||||||    
T  39241431 attactctctccatttcttttcttttgatgttttagctcttgacataaattttaagaagtaattaaagtatataaa 39241356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 152 - 200
Target Start/End: Complemental strand, 4817520 - 4817472
Alignment:
Q  152 tgttttagctcttgacacaagttttaaggagtaattaaagtatataaac 200  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||    
T  4817520 tgttttaactcttgacacaagttttaaggagtaattaaagtatataaac 4817472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 126 - 195
Target Start/End: Original strand, 37875727 - 37875796
Alignment:
Q  126 tactccctctattccttttcttttgctgttttagctcttgacacaagttttaaggagtaattaaagtata 195  Q
    ||||||||| ||| ||||||||||| |||||||||||||| ||||||| ||||||| ||||||| |||||    
T  37875727 tactccctccatttcttttcttttgatgttttagctcttggcacaagtcttaaggaataattaatgtata 37875796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 126 - 159
Target Start/End: Original strand, 46220259 - 46220292
Alignment:
Q  126 tactccctctattccttttcttttgctgttttag 159  Q
    ||||||||||||||||||||||||| ||||||||    
T  46220259 tactccctctattccttttcttttgatgttttag 46220292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 63; Significance: 1e-27; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 126 - 200
Target Start/End: Complemental strand, 32274711 - 32274637
Alignment:
Q  126 tactccctctattccttttcttttgctgttttagctcttgacacaagttttaaggagtaattaaagtatataaac 200  Q
    ||||||||| |||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  32274711 tactccctccattcattttcttttgatgttttagctcttgacacaagttttaaggagtaattaaagtatataaac 32274637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 126 - 200
Target Start/End: Complemental strand, 2543358 - 2543284
Alignment:
Q  126 tactccctctattccttttcttttgctgttttagctcttgacacaagttttaaggagtaattaaagtatataaac 200  Q
    ||||||||| |||| |||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||    
T  2543358 tactccctccattcgttttcttttgatgttttagctcttgacacaagttttaagaagtaattaaagtatataaac 2543284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 126 - 199
Target Start/End: Original strand, 27312114 - 27312188
Alignment:
Q  126 tactccctctattccttttcttttgctgttttagctctt-gacacaagttttaaggagtaattaaagtatataaa 199  Q
    ||||||||| ||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||    
T  27312114 tactccctccattccttttcttttgatgttttagctcttagacacaagttttaaggagtaattaaagtatataaa 27312188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 126 - 190
Target Start/End: Original strand, 8504733 - 8504797
Alignment:
Q  126 tactccctctattccttttcttttgctgttttagctcttgacacaagttttaaggagtaattaaa 190  Q
    ||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  8504733 tactccctccattccttttcttttgatgttttagctcttgacacaagttttaaggagtaattaaa 8504797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 123 - 199
Target Start/End: Original strand, 29452539 - 29452615
Alignment:
Q  123 tattactccctctattccttttcttttgctgttttagctcttgacacaagttttaaggagtaattaaagtatataaa 199  Q
    ||||||||||||||||  |||||||||| ||||||| |||||| |||||||||||||||||||||||||||||||||    
T  29452539 tattactccctctatttattttcttttgatgttttaactcttggcacaagttttaaggagtaattaaagtatataaa 29452615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 136 - 199
Target Start/End: Complemental strand, 5008398 - 5008335
Alignment:
Q  136 attccttttcttttgctgttttagctcttgacacaagttttaaggagtaattaaagtatataaa 199  Q
    ||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||    
T  5008398 attccttttcttttgatgttttagctcttaacacaagttttaaggagtaattaaagtatataaa 5008335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 140 - 199
Target Start/End: Original strand, 7156251 - 7156310
Alignment:
Q  140 cttttcttttgctgttttagctcttgacacaagttttaaggagtaattaaagtatataaa 199  Q
    |||| |||||| ||||||||||||||| |||||||||||||| |||||||||||||||||    
T  7156251 ctttgcttttgatgttttagctcttgatacaagttttaaggaataattaaagtatataaa 7156310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 126 - 199
Target Start/End: Original strand, 31170990 - 31171063
Alignment:
Q  126 tactccctctattccttttcttttgctgttttagctcttgacacaagttttaaggagtaattaaagtatataaa 199  Q
    ||||||||| ||| ||||||||||| | |||||| ||||  ||||| |||||||||||||||||||||||||||    
T  31170990 tactccctccatttcttttcttttgatattttagttcttagcacaaattttaaggagtaattaaagtatataaa 31171063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 125 - 195
Target Start/End: Complemental strand, 18742224 - 18742154
Alignment:
Q  125 ttactccctctattccttttcttttgctgttttagctcttgacacaagttttaaggagtaattaaagtata 195  Q
    |||||||||| ||| ||||||||||| ||||||| |||||| ||||||| ||||||| ||||||| |||||    
T  18742224 ttactccctccatttcttttcttttgatgttttacctcttggcacaagtcttaaggaataattaatgtata 18742154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0103 (Bit Score: 60; Significance: 9e-26; HSPs: 1)
Name: scaffold0103
Description:

Target: scaffold0103; HSP #1
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 136 - 199
Target Start/End: Complemental strand, 44885 - 44822
Alignment:
Q  136 attccttttcttttgctgttttagctcttgacacaagttttaaggagtaattaaagtatataaa 199  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  44885 attccttttcttttgatgttttagctcttgacacaagttttaaggagtaattaaagtatataaa 44822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University