View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16562_low_4 (Length: 431)

Name: NF16562_low_4
Description: NF16562
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16562_low_4
NF16562_low_4
[»] chr2 (7 HSPs)
chr2 (1-199)||(13447972-13448170)
chr2 (258-431)||(13447741-13447913)
chr2 (1-89)||(13439919-13440007)
chr2 (1-192)||(13454468-13454641)
chr2 (89-197)||(13439829-13439937)
chr2 (259-342)||(13454315-13454399)
chr2 (366-429)||(13454185-13454249)
[»] chr8 (1 HSPs)
chr8 (3-89)||(12641855-12641941)
[»] chr5 (3 HSPs)
chr5 (24-88)||(28385054-28385118)
chr5 (89-186)||(28384975-28385071)
chr5 (16-80)||(12540413-12540477)
[»] chr4 (3 HSPs)
chr4 (16-88)||(48961011-48961083)
chr4 (1-87)||(48965050-48965136)
chr4 (21-88)||(48967178-48967245)


Alignment Details
Target: chr2 (Bit Score: 195; Significance: 1e-106; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 199
Target Start/End: Complemental strand, 13448170 - 13447972
Alignment:
Q  1 agaaaaagctatacaagctattcaagaagggggctcgtcttataataatttgttggctttgattgacgaacttaaaagatcgagagaccttaaaagattg 100  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13448170 agaaaaagctatacaagctattcaagaaggtggctcgtcttataataatttgttggctttgattgacgaacttaaaagatcgagagaccttaaaagattg 13448071  T
Q  101 agagacctcaagctggatgattaattcaaatgagtattgtctaaattttttcaacttttcctaataacatcgtggtttcgtcaagcggaagtgtgaatg 199  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13448070 agagacctcaagctggatgattaattcaaatgagtattgtctaaattttttcaacttttcctaataacatcgtggtttcgtcaagcggaagtgtgaatg 13447972  T

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Target: chr2; HSP #2
Raw Score: 158; E-Value: 6e-84
Query Start/End: Original strand, 258 - 431
Target Start/End: Complemental strand, 13447913 - 13447741
Alignment:
Q  258 cacaatacctgccacaagtactctcaaatcaatgaagtaacatttagctactctggcagatttaacatgaattttcgaatagtttaaacttaattgtttt 357  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||    
T  13447913 cacaatacctgccacaagtactctcaaatcaatgaagtaacatttagctactctggcagatttaacatgaattttcgaatagttttc-cttaattgtttt 13447815  T
Q  358 gattcaatttttggtgtgtacgtggctattctaacttcttaatgtgtttttgcatttattttaatttttcaact 431  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13447814 gattcaatttttggtgtgtacgtggctattctaacttcttaatgtgtttttgcatttattttaatttttcaact 13447741  T

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Target: chr2; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 13440007 - 13439919
Alignment:
Q  1 agaaaaagctatacaagctattcaagaagggggctcgtcttataataatttgttggctttgattgacgaacttaaaagatcgagagacc 89  Q
    |||||| |||| |||||||||||||||||| ||||||||||||||||||||||||||||| ||||| ||||||||||||| ||||||||    
T  13440007 agaaaaggctacacaagctattcaagaaggtggctcgtcttataataatttgttggctttaattgaagaacttaaaagattgagagacc 13439919  T

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Target: chr2; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 1 - 192
Target Start/End: Complemental strand, 13454641 - 13454468
Alignment:
Q  1 agaaaaagctatacaagctattcaagaagggggctcgtcttataataatttgttggctttgattgacgaacttaaaagatcgagagaccttaaaagattg 100  Q
    |||||| |||| ||||||||||||| |||| ||||| ||||||||||||||||||||||||||||| ||||||||||||                  |||    
T  13454641 agaaaaggctacacaagctattcaaaaaggtggctcatcttataataatttgttggctttgattgatgaacttaaaaga------------------ttg 13454560  T
Q  101 agagacctcaagctggatgattaattcaaatgagtattgtctaaattttttcaacttttcctaataacatcgtggtttcgtcaagcggaagt 192  Q
    ||| ||||||||| | |||||||||||||| ||| ||||| ||| |||||||||||||| |||||||||| || |||||||||||| |||||    
T  13454559 agaaacctcaagccgcatgattaattcaaaggagcattgtgtaagttttttcaactttttctaataacattgttgtttcgtcaagcagaagt 13454468  T

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Target: chr2; HSP #5
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 89 - 197
Target Start/End: Complemental strand, 13439937 - 13439829
Alignment:
Q  89 cttaaaagattgagagacctcaagctggatgattaattcaaatgagtattgtctaaattttttcaacttttcctaataacatcgtggtttcgtcaagcgg 188  Q
    ||||||||||||||||||| |||||   |||||||||||||| || |||||||||  |||||||||| | ||||||||| || || | |||||||||| |    
T  13439937 cttaaaagattgagagaccccaagcgacatgattaattcaaaggactattgtctatgttttttcaacctatcctaataatattgttggttcgtcaagcag 13439838  T
Q  189 aagtgtgaa 197  Q
    |||||||||    
T  13439837 aagtgtgaa 13439829  T

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Target: chr2; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 259 - 342
Target Start/End: Complemental strand, 13454399 - 13454315
Alignment:
Q  259 acaatacctgccacaagtactctcaaatcaatgaagtaac-atttagctactctggcagatttaacatgaattttcgaatagttt 342  Q
    |||||| |||| |||||||||||||||||||||||| ||| || |||||||  |||||||||||| ||||||||| |||||||||    
T  13454399 acaatatctgcgacaagtactctcaaatcaatgaagcaacaatatagctaccatggcagatttaatatgaatttttgaatagttt 13454315  T

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Target: chr2; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 366 - 429
Target Start/End: Complemental strand, 13454249 - 13454185
Alignment:
Q  366 ttttggtgtgtacgtggctattctaacttcttaatgtgtttttgcatttatttt-aatttttcaa 429  Q
    ||||| ||||||||||| | |||||||||||||||||||||| ||||||||||| ||||||||||    
T  13454249 ttttgttgtgtacgtggttcttctaacttcttaatgtgttttcgcatttattttcaatttttcaa 13454185  T

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Target: chr8 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 3 - 89
Target Start/End: Original strand, 12641855 - 12641941
Alignment:
Q  3 aaaaagctatacaagctattcaagaagggggctcgtcttataataatttgttggctttgattgacgaacttaaaagatcgagagacc 89  Q
    |||| |||| ||| ||| || ||||||| || |||||| |||| |||||||||||||||||| |||| |||||||||||||||||||    
T  12641855 aaaaggctacacatgctgttgaagaaggcgggtcgtctcataacaatttgttggctttgattaacgatcttaaaagatcgagagacc 12641941  T

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Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 24 - 88
Target Start/End: Complemental strand, 28385118 - 28385054
Alignment:
Q  24 aagaagggggctcgtcttataataatttgttggctttgattgacgaacttaaaagatcgagagac 88  Q
    ||||||| || || ||||||||||||||||| ||||| || |||||||||||||||| |||||||    
T  28385118 aagaaggtggttcctcttataataatttgttagctttaatcgacgaacttaaaagattgagagac 28385054  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 89 - 186
Target Start/End: Complemental strand, 28385071 - 28384975
Alignment:
Q  89 cttaaaagattgagagacctcaagctggatgattaattcaaatgagtattgtctaaattttttcaacttttcctaataacatcgtggtttcgtcaagc 186  Q
    ||||||||||||||||||  ||| |   ||||||||| ||||||| ||| || | | |||||| ||||| |||||||||| |||| ||||||||||||    
T  28385071 cttaaaagattgagagacagcaaaccacatgattaat-caaatgaatatggtatgagttttttgaacttatcctaataacgtcgttgtttcgtcaagc 28384975  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 16 - 80
Target Start/End: Complemental strand, 12540477 - 12540413
Alignment:
Q  16 agctattcaagaagggggctcgtcttataataatttgttggctttgattgacgaacttaaaagat 80  Q
    |||| |||||||||| || || ||| |||||||||||||  ||||||| |||||| |||||||||    
T  12540477 agctgttcaagaaggtggttcctctcataataatttgttatctttgatcgacgaaattaaaagat 12540413  T

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Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 16 - 88
Target Start/End: Complemental strand, 48961083 - 48961011
Alignment:
Q  16 agctattcaagaagggggctcgtcttataataatttgttggctttgattgacgaacttaaaagatcgagagac 88  Q
    |||| |||||| ||| ||||| ||| ||||||||||||||||||| ||||| || |||||||||| |||||||    
T  48961083 agctgttcaagtaggcggctcatctcataataatttgttggctttaattgatgatcttaaaagattgagagac 48961011  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 48965136 - 48965050
Alignment:
Q  1 agaaaaagctatacaagctattcaagaagggggctcgtcttataataatttgttggctttgattgacgaacttaaaagatcgagaga 87  Q
    |||||| |||| || ||| ||||||||||| ||||||||| |||| |||||||| || |||||||| || || ||||||| ||||||    
T  48965136 agaaaaggctagacgagccattcaagaaggtggctcgtctcataagaatttgttagccttgattgatgatctcaaaagattgagaga 48965050  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 21 - 88
Target Start/End: Complemental strand, 48967245 - 48967178
Alignment:
Q  21 ttcaagaagggggctcgtcttataataatttgttggctttgattgacgaacttaaaagatcgagagac 88  Q
    |||||||||| |||| |||||||||||||||  | ||||||||||| || |||||||||  |||||||    
T  48967245 ttcaagaaggtggcttgtcttataataatttacttgctttgattgatgatcttaaaagaatgagagac 48967178  T

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