View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16562_low_6 (Length: 402)
Name: NF16562_low_6
Description: NF16562
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16562_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 313; Significance: 1e-176; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 64 - 392
Target Start/End: Complemental strand, 27560418 - 27560090
Alignment:
| Q |
64 |
tgtccttgaattaatactatacatactttttaagcattaaggtttattgattcctttgttttgaagcagacaagcgaactcaagagccttacaatcaaat |
163 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27560418 |
tgtccttgaattaataccatacatactttttaagcattaaggtttattgattcctttgttttgaagcagacaagcgaactcaagagccttacaatcaaat |
27560319 |
T |
|
| Q |
164 |
gtgctgaacaggttttgaaaataaagtcttcaaaagcattggtaagtctaccttggtgtttttctttatctgtatgtatttagttcttcaacgcctcttt |
263 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27560318 |
gtgctgaacaggttttggaaataaagtcttcaaaagcattggtaagtctaccttggtgtttttctttatctgtatgtatttagttcttcaacgcctcttt |
27560219 |
T |
|
| Q |
264 |
tgtacaacaaatacattttcctcatttgagattaaatttaattgagtgtcacttatattttaccttctaagtcttagagcatgtctcggactgaaatgaa |
363 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||| |
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| T |
27560218 |
tgtacaacaaatacattttcctcatttgagattaaatttaattgagtgtcacttatattttaccttctaaatcttagagcatgtctcggactgaaacgaa |
27560119 |
T |
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| Q |
364 |
tttgattgcaatgtttttcttttcctttg |
392 |
Q |
| |
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||||||||||||||||||||||||||||| |
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| T |
27560118 |
tttgattgcaatgtttttcttttcctttg |
27560090 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 22 - 210
Target Start/End: Complemental strand, 36667943 - 36667764
Alignment:
| Q |
22 |
atgttggctggattataccgcaagagggtgtaggcgggttattgtccttgaattaatactatacatactttttaagcattaaggtttattgattcctttg |
121 |
Q |
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| T |
36667943 |
atgttggctggattatactgccagaggttataggcgagttcttgtccttgagttaatactat---------ttaagcattaaggtttattgattcctttg |
36667853 |
T |
|
| Q |
122 |
ttttgaagcagacaagcgaactcaagagccttacaatcaaatgtgctgaacaggttttgaaaataaagtcttcaaaagcattggtaagt |
210 |
Q |
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| T |
36667852 |
ttttgaagcagacaagcgaactcaagagccttgcaaacaaatgtgctgagcaggattcggaaataaagtcgtcaaaagcaatggtaagt |
36667764 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 315 - 392
Target Start/End: Complemental strand, 36667728 - 36667651
Alignment:
| Q |
315 |
cttatattttaccttctaagtcttagagcatgtctcggactgaaatga-atttgattgcaatgtttttcttttcctttg |
392 |
Q |
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||||||||||||||||||| | |||||||||||||| |||| |||| | ||||||||||| |||||||||||||||||| |
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| T |
36667728 |
cttatattttaccttctaaattttagagcatgtctctgact-aaatcagatttgattgcattgtttttcttttcctttg |
36667651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 112; Significance: 2e-56; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 58 - 236
Target Start/End: Original strand, 24203449 - 24203628
Alignment:
| Q |
58 |
ggttattgtccttgaattaatactatacatactttttaagcattaaggtttattgattcctttgttttgaagcagacaagcgaactcaagagccttacaa |
157 |
Q |
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|||| ||||||||||||| |||| ||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||| ||||||||| ||| |
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| T |
24203449 |
ggttcttgtccttgaatttataccatacatactttttaagcattaaggtttattggttcctttgttttgaagcggacaagcgaactgaagagccttgcaa |
24203548 |
T |
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| Q |
158 |
tcaaatgtgctgaacaggttttgaaaataaagtcttcaaaagcattggtaagtc-taccttggtgtttttctttatctgt |
236 |
Q |
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| T |
24203549 |
ataaatgtgctgaacaggttttgggaatgaagacttcaaaaacattggtaagtcttacctttgtgtttttctttatctgt |
24203628 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 84 - 145
Target Start/End: Complemental strand, 30870681 - 30870622
Alignment:
| Q |
84 |
acatactttttaagcattaaggtttattgattcctttgttttgaagcagacaagcgaactca |
145 |
Q |
| |
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|||||||||||| |||||||| ||||||||| |||| |||||||||||||||| | |||||| |
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| T |
30870681 |
acatacttttta-gcattaagatttattgatccctt-gttttgaagcagacaatcaaactca |
30870622 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 109; Significance: 1e-54; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 23 - 219
Target Start/End: Complemental strand, 29409880 - 29409684
Alignment:
| Q |
23 |
tgttggctggattataccgcaagagggtgtaggcgggttattgtccttgaattaatactatacatactttttaagcattaaggtttattgattcctttgt |
122 |
Q |
| |
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|||||| |||| ||||| ||||||| | |||||||||| ||||||||||| || ||| |||||||||||||||||||||||||| || |||||||| |
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| T |
29409880 |
tgttggttggaatatactgcaagagtttataggcgggttcttgtccttgaactagtaccatacatactttttaagcattaaggttcgttatgtcctttgt |
29409781 |
T |
|
| Q |
123 |
tttgaagcagacaagcgaactcaagagccttacaatcaaatgtgctgaacaggttttgaaaataaagtcttcaaaagcattggtaagtctaccttgg |
219 |
Q |
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|||||||||||||||||||||||||||| || ||| |||||||||||||||||||||| |||| |||||||||||||||||||| ||||||| |||| |
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| T |
29409780 |
tttgaagcagacaagcgaactcaagagctttgcaaacaaatgtgctgaacaggttttggaaatgaagtcttcaaaagcattggtgagtctactttgg |
29409684 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 277 - 392
Target Start/End: Complemental strand, 29409614 - 29409491
Alignment:
| Q |
277 |
cattttcctcatttgagattaaatttaattgagtgtcacttatattt---taccttctaagtcttagagcatgtctcggactgaaatga------atttg |
367 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||| ||||||||||||||| |||| |||| | | ||| |
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| T |
29409614 |
cattttcctcatttgagattaaatttaattgagtgtcacttgtattttagtaccttctaaatcttagagcatgtctgtgact-aaatcagatttgaattg |
29409516 |
T |
|
| Q |
368 |
attgcaatgtttttcttttcctttg |
392 |
Q |
| |
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||||||||||||||||||||||||| |
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| T |
29409515 |
attgcaatgtttttcttttcctttg |
29409491 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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