View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16562_low_7 (Length: 368)

Name: NF16562_low_7
Description: NF16562
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16562_low_7
NF16562_low_7
[»] chr3 (4 HSPs)
chr3 (1-336)||(10771523-10771855)
chr3 (240-337)||(8314032-8314128)
chr3 (229-336)||(1928360-1928468)
chr3 (253-343)||(10293621-10293711)
[»] chr4 (10 HSPs)
chr4 (229-343)||(56505706-56505821)
chr4 (240-299)||(56506513-56506572)
chr4 (177-337)||(36096354-36096510)
chr4 (240-337)||(50678798-50678894)
chr4 (177-337)||(50679303-50679459)
chr4 (177-337)||(36095836-36095991)
chr4 (177-337)||(45830077-45830231)
chr4 (229-336)||(43050627-43050735)
chr4 (240-343)||(293156-293258)
chr4 (240-336)||(11529188-11529283)
[»] chr8 (13 HSPs)
chr8 (171-337)||(9822767-9822929)
chr8 (229-343)||(13937316-13937430)
chr8 (177-337)||(39723927-39724083)
chr8 (229-337)||(22851409-22851518)
chr8 (229-342)||(6092789-6092902)
chr8 (240-337)||(9823300-9823396)
chr8 (177-337)||(13026654-13026810)
chr8 (240-337)||(13027220-13027316)
chr8 (229-342)||(13936736-13936847)
chr8 (229-334)||(39723424-39723530)
chr8 (229-337)||(3307357-3307466)
chr8 (253-343)||(41662354-41662444)
chr8 (253-343)||(43245884-43245974)
[»] chr2 (7 HSPs)
chr2 (228-337)||(7591220-7591329)
chr2 (184-337)||(26842124-26842273)
chr2 (177-337)||(2639361-2639517)
chr2 (177-335)||(7591729-7591883)
chr2 (240-337)||(26841606-26841702)
chr2 (240-337)||(2638839-2638935)
chr2 (240-337)||(18296095-18296191)
[»] scaffold0328 (2 HSPs)
scaffold0328 (177-337)||(6674-6830)
scaffold0328 (177-322)||(6186-6326)
[»] chr7 (7 HSPs)
chr7 (177-337)||(44599508-44599664)
chr7 (177-336)||(8643646-8643800)
chr7 (177-337)||(13863332-13863488)
chr7 (240-337)||(44600074-44600170)
chr7 (177-337)||(13863837-13863991)
chr7 (240-343)||(46816250-46816352)
chr7 (309-342)||(6908226-6908259)
[»] chr6 (2 HSPs)
chr6 (177-337)||(33829515-33829671)
chr6 (240-337)||(33829009-33829105)
[»] chr5 (6 HSPs)
chr5 (177-337)||(18817490-18817646)
chr5 (240-337)||(18816971-18817067)
chr5 (229-335)||(11351355-11351460)
chr5 (253-323)||(42919337-42919406)
chr5 (309-342)||(31569920-31569953)
chr5 (229-337)||(11350827-11350935)
[»] chr1 (7 HSPs)
chr1 (240-337)||(6002256-6002352)
chr1 (240-337)||(49284428-49284524)
chr1 (177-333)||(49284934-49285086)
chr1 (240-336)||(6002833-6002928)
chr1 (253-343)||(39691952-39692041)
chr1 (253-342)||(50615573-50615661)
chr1 (253-342)||(50623401-50623489)
[»] scaffold0802 (2 HSPs)
scaffold0802 (253-343)||(1371-1461)
scaffold0802 (269-343)||(1131-1204)
[»] scaffold0110 (1 HSPs)
scaffold0110 (253-342)||(45758-45847)


Alignment Details
Target: chr3 (Bit Score: 217; Significance: 1e-119; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 336
Target Start/End: Complemental strand, 10771855 - 10771523
Alignment:
Q  1 tgcagtaaatgtgataatcggtgctctttggaacattagattgctcaaagagcatcagatgctttgttaaaaccattagattgttttgtttattcaacac 100  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  10771855 tgcagtaaatgtgataattggtgctctttggaacattagattgctcaaatagcatcagatgctttgttagaaccattagattgttttgtttattcaacac 10771756  T
Q  101 aagcagatcaagatacaccaatctatgaatgtgaatactttgaaaactggtatgaataacagaaaatcagacacaaggcaaatattaaacgaagacagtc 200  Q
    ||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| | |||||| ||| || | |    
T  10771755 aagtagatcaagatacaccaatgtatgaatgtgaatactttgaaaactggtatgaataactgaaaatcagacacaaggcagacattaaatgaa-actgac 10771657  T
Q  201 atcaaaatcatatacataatcactaaagctaaaacacat-ggggccttcaaaccagaaagggggaaaatgatacggtgtaaaatcgctcaattaaaaaca 299  Q
    |||||||||||| |||||||||||||| ||||||||||| ||||||||||||||||||| ||| ||||||||| |||||||||||||||  |||||||||    
T  10771656 atcaaaatcatacacataatcactaaaactaaaacacatgggggccttcaaaccagaaa-gggaaaaatgata-ggtgtaaaatcgctcggttaaaaaca 10771559  T
Q  300 cggggtgtaaaaatcgcacaattgacaatagataggg 336  Q
     || ||  |||||||||||||||||||| ||||||||    
T  10771558 tggagt-aaaaaatcgcacaattgacaaaagataggg 10771523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 240 - 337
Target Start/End: Complemental strand, 8314128 - 8314032
Alignment:
Q  240 ggggccttcaaaccagaaagggggaaaatgatacggtgtaaaatcgctcaattaaaaacacggggtgtaaaaatcgcacaattgacaatagatagggg 337  Q
    |||||| | ||| |||||||||||||||||||| |||| |||||||| |  |||||||||  |||||  ||||||||||||||||||| | |||||||    
T  8314128 ggggccataaaatcagaaagggggaaaatgatagggtgcaaaatcgcacgtttaaaaacattgggtg-caaaatcgcacaattgacaaaatatagggg 8314032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 229 - 336
Target Start/End: Original strand, 1928360 - 1928468
Alignment:
Q  229 ctaaaacacatgggg--ccttcaaaccagaaagggggaaaatgatacggtgtaaaatcgctcaattaaaaacacggggtgtaaaaatcgcacaattgaca 326  Q
    |||||||| ||||||  ||||||||||||||| |||||||| |||| |||| |||| | |||  ||||||| | ||||||  ||||||||||||||| ||    
T  1928360 ctaaaacatatgggggcccttcaaaccagaaaaggggaaaaggatagggtgcaaaaccactcgtttaaaaatatggggtg-caaaatcgcacaattggca 1928458  T
Q  327 atagataggg 336  Q
    | ||||||||    
T  1928459 aaagataggg 1928468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 253 - 343
Target Start/End: Complemental strand, 10293711 - 10293621
Alignment:
Q  253 cagaaaggggg-aaaatgatacggtgtaaaatcgctcaattaaaaacacggggtgtaaaaatcgcacaattgacaatagatagggggaaaaa 343  Q
    ||||||||||| |||| |||  |||| ||||||||||||  ||||| | |||||| |||| ||||||||||||||| ||||||||| |||||    
T  10293711 cagaaagggggcaaaaagatggggtgcaaaatcgctcaaaaaaaaagagggggtgcaaaa-tcgcacaattgacaaaagataggggaaaaaa 10293621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 54; Significance: 6e-22; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 229 - 343
Target Start/End: Complemental strand, 56505821 - 56505706
Alignment:
Q  229 ctaaaacacatgggg--ccttcaaaccagaaagggggaaaatgatacggtgtaaaatcgctcaattaaaaacacggggtgtaaaaatcgcacaattgaca 326  Q
    |||||||||||||||  |||||||||||||||||||||||| |||  |||| ||||| ||||||||||||| | ||||||  ||||||||||||||| ||    
T  56505821 ctaaaacacatggggggccttcaaaccagaaagggggaaaaagatggggtgcaaaatagctcaattaaaaatatggggtg-caaaatcgcacaattggca 56505723  T
Q  327 atagatagggggaaaaa 343  Q
    | |||||||||| ||||    
T  56505722 aaagataggggggaaaa 56505706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 240 - 299
Target Start/End: Original strand, 56506513 - 56506572
Alignment:
Q  240 ggggccttcaaaccagaaagggggaaaatgatacggtgtaaaatcgctcaattaaaaaca 299  Q
    |||||||||||| |||||||||||||||||||  |||| |||||||||||||||||||||    
T  56506513 ggggccttcaaatcagaaagggggaaaatgatggggtgcaaaatcgctcaattaaaaaca 56506572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 177 - 337
Target Start/End: Original strand, 36096354 - 36096510
Alignment:
Q  177 ggcaaatattaaacgaagaca-gtcatcaaaatcatatacataatcactaaagctaaaacacatgggg--ccttcaaaccagaaagggggaaaatgatac 273  Q
    |||||| |||||| ||||||| ||||||||||||| | |||| |||||||||      ||||||||||  ||| |||| |||||||||| |||| |||      
T  36096354 ggcaaacattaaatgaagacacgtcatcaaaatcagacacatcatcactaaa------acacatggggggcctccaaatcagaaaggggaaaaaagatgg 36096447  T
Q  274 ggtgtaaaatcgctcaattaaaaacacggggtgtaaaaatcgcacaattgacaatagatagggg 337  Q
    |||| ||||||||||  ||||||||| |||||| |||| ||||||||||| ||| |||||||||    
T  36096448 ggtgcaaaatcgctcgtttaaaaacatggggtgcaaaa-tcgcacaattggcaaaagatagggg 36096510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 240 - 337
Target Start/End: Complemental strand, 50678894 - 50678798
Alignment:
Q  240 ggggccttcaaaccagaaagggggaaaatgatacggtgtaaaatcgctcaattaaaaacacggggtgtaaaaatcgcacaattgacaatagatagggg 337  Q
    ||||||| |||| ||||||||||||||| |||  |||| ||||||||||  ||||||||| ||||||  ||||||||||||||| ||| |||||||||    
T  50678894 ggggcctccaaatcagaaagggggaaaaagatggggtgcaaaatcgctcgtttaaaaacatggggtg-caaaatcgcacaattggcaaaagatagggg 50678798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 177 - 337
Target Start/End: Original strand, 50679303 - 50679459
Alignment:
Q  177 ggcaaatattaaacgaagaca-gtcatcaaaatcatatacataatcactaaagctaaaacacatgggg--ccttcaaaccagaaagggggaaaatgatac 273  Q
    |||||| |||||| ||||||| ||||||||||||| | |||| |||||||||      ||||||||||  ||| |||| ||||||||||||||| |||      
T  50679303 ggcaaacattaaatgaagacacgtcatcaaaatcagacacatcatcactaaa------acacatggggggcctccaaatcagaaagggggaaaaagatgg 50679396  T
Q  274 ggtgtaaaatcgctcaattaaaaacacggggtgtaaaaatcgcacaattgacaatagatagggg 337  Q
    |||| ||||||||||  ||||||||| ||||||  ||||||| ||||||| ||| |||||||||    
T  50679397 ggtgcaaaatcgctcgtttaaaaacatggggtg-caaaatcgtacaattggcaaaagatagggg 50679459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 177 - 337
Target Start/End: Complemental strand, 36095991 - 36095836
Alignment:
Q  177 ggcaaatattaaacgaagaca-gtcatcaaaatcatatacataatcactaaagctaaaacacatggggccttcaaaccagaaagggggaaaatgatacgg 275  Q
    |||||| |||||| ||||||| ||||||||||||| | |||| |||||||||    | |||   ||||||| |||| |||||||||| |||| |||| ||    
T  36095991 ggcaaacattaaatgaagacacgtcatcaaaatcagacacatcatcactaaa----atacatggggggcctccaaatcagaaaggggaaaaa-gataggg 36095897  T
Q  276 tgtaaaatcgctcaattaaaaacacggggtgtaaaaatcgcacaattgacaatagatagggg 337  Q
    || ||||||||||  ||||||||| |||||| |||| ||||||||||| ||| |||||||||    
T  36095896 tgcaaaatcgctcgtttaaaaacatggggtgcaaaa-tcgcacaattggcaaaagatagggg 36095836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 177 - 337
Target Start/End: Original strand, 45830077 - 45830231
Alignment:
Q  177 ggcaaatattaaacgaagaca-gtcatcaaaatcatatacataatcactaaagctaaaacacatggggc-cttcaaaccagaaagggggaaaatgatacg 274  Q
    |||||| |||||| ||||||| ||||||||||||| | |||| |||||||||      ||| ||||||  || |||| |||||||||| |||| |||  |    
T  45830077 ggcaaacattaaatgaagacatgtcatcaaaatcagacacatcatcactaaa------acatatggggggctccaaatcagaaaggggaaaaa-gatggg 45830169  T
Q  275 gtgtaaaatcgctcaattaaaaacacggggtgtaaaaatcgcacaattgacaatagatagggg 337  Q
    ||| ||||||||||  ||||||||| ||||||||||| ||||||||||||||| |||||||||    
T  45830170 gtgcaaaatcgctcttttaaaaacatggggtgtaaaa-tcgcacaattgacaaaagatagggg 45830231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 229 - 336
Target Start/End: Complemental strand, 43050735 - 43050627
Alignment:
Q  229 ctaaaacacatgg--ggccttcaaaccagaaagggggaaaatgatacggtgtaaaatcgctcaattaaaaacacggggtgtaaaaatcgcacaattgaca 326  Q
    |||||||||||||  ||||| |||| ||||||||||||||| |||  |||| |||||| |||  ||||||||| ||||||  |||||||||||||||  |    
T  43050735 ctaaaacacatggagggcctccaaatcagaaagggggaaaaagatggggtgcaaaatcactcgtttaaaaacatggggtg-caaaatcgcacaattggta 43050637  T
Q  327 atagataggg 336  Q
    | ||||||||    
T  43050636 aaagataggg 43050627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 240 - 343
Target Start/End: Original strand, 293156 - 293258
Alignment:
Q  240 ggggccttcaaaccagaaagggggaaaatgatacggtgtaaaatcgctcaattaaaaacacggggtgtaaaaatcgcacaattgacaatagataggggga 339  Q
    |||||| | ||| |||||||||||||||  |||||| | ||||||||||  ||||||  | |||||| |||| |||||||||||||||   |||||||||    
T  293156 ggggccataaaatcagaaagggggaaaactatacggggcaaaatcgctcgtttaaaactatggggtgcaaaa-tcgcacaattgacaaactataggggga 293254  T
Q  340 aaaa 343  Q
    ||||    
T  293255 aaaa 293258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 240 - 336
Target Start/End: Complemental strand, 11529283 - 11529188
Alignment:
Q  240 ggggccttcaaaccagaaagggggaaaatgatacggtgtaaaatcgctcaattaaaaacacggggtgtaaaaatcgcacaattgacaatagataggg 336  Q
    |||| |||||||| | |||| |||||||||||  |||| |||||||| | |||||||||| ||||||  |||||| |||||||| ||| || |||||    
T  11529283 ggggacttcaaactaaaaagagggaaaatgatgtggtgcaaaatcgcacgattaaaaacatggggtg-caaaatcacacaattggcaaaagttaggg 11529188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 52; Significance: 1e-20; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 171 - 337
Target Start/End: Complemental strand, 9822929 - 9822767
Alignment:
Q  171 acacaaggcaaatattaaacgaagaca-gtcatcaaaatcatatacataatcactaaagctaaaacacatggg--gccttcaaaccagaaagggggaaaa 267  Q
    ||||| |||||| |||||| ||||||| ||||||||||||| | |||| |||||||||      |||||||||  |||| |||| |||||||||||||||    
T  9822929 acacatggcaaacattaaatgaagacacgtcatcaaaatcagacacatgatcactaaa------acacatgggtggcctccaaatcagaaagggggaaaa 9822836  T
Q  268 tgatacggtgtaaaatcgctcaattaaaaacacggggtgtaaaaatcgcacaattgacaatagatagggg 337  Q
     |||| |||| ||||||||||  ||||||||| ||||||  |||||||||||||||| || |||||||||    
T  9822835 agatatggtgcaaaatcgctcgtttaaaaacatggggtg-caaaatcgcacaattgataaaagatagggg 9822767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 229 - 343
Target Start/End: Original strand, 13937316 - 13937430
Alignment:
Q  229 ctaaaacacatgggg-ccttcaaaccagaaagggggaaaatgatacggtgtaaaatcgctcaattaaaaacacggggtgtaaaaatcgcacaattgacaa 327  Q
    ||||||||||||||| |||||||||||||||||||||||| |||  |||| |||||| |||  ||||||||| ||||||  ||| |||||||||||||||    
T  13937316 ctaaaacacatgggggccttcaaaccagaaagggggaaaaggatgaggtgcaaaatcactcgtttaaaaacatggggtg-caaattcgcacaattgacaa 13937414  T
Q  328 tagatagggggaaaaa 343  Q
     | |||||||| ||||    
T  13937415 aaaataggggggaaaa 13937430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 177 - 337
Target Start/End: Original strand, 39723927 - 39724083
Alignment:
Q  177 ggcaaatattaaacgaagaca-gtcatcaaaatcatatacataatcactaaagctaaaacacatgg--ggccttcaaaccagaaagggggaaaatgatac 273  Q
    |||||| |||||| ||||||| ||||||||||||| | |||| |||||||||      ||||||||  ||||| |||| ||||||||||||||| |||      
T  39723927 ggcaaacattaaatgaagacacgtcatcaaaatcaaacacatcatcactaaa------acacatggagggcctccaaatcagaaagggggaaaaagatgg 39724020  T
Q  274 ggtgtaaaatcgctcaattaaaaacacggggtgtaaaaatcgcacaattgacaatagatagggg 337  Q
    |||| ||||||||||  ||||||||| ||||||  ||||||||||||||| ||| |||||||||    
T  39724021 ggtgcaaaatcgctcgtttaaaaacatggggtg-caaaatcgcacaattggcaaaagatagggg 39724083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 229 - 337
Target Start/End: Complemental strand, 22851518 - 22851409
Alignment:
Q  229 ctaaaacacatgg--ggccttcaaaccagaaagggggaaaatgatacggtgtaaaatcgctcaattaaaaacacggggtgtaaaaatcgcacaattgaca 326  Q
    |||||||||||||  ||||| |||| ||||||||||||||| |||  |||| |||||||||   ||||||||| ||||||  ||||||||||||||||||    
T  22851518 ctaaaacacatggagggcctccaaatcagaaagggggaaaaagatggggtgcaaaatcgcttgtttaaaaacatggggtg-caaaatcgcacaattgaca 22851420  T
Q  327 atagatagggg 337  Q
    | |||||||||    
T  22851419 aaagatagggg 22851409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 229 - 342
Target Start/End: Complemental strand, 6092902 - 6092789
Alignment:
Q  229 ctaaaacacatgggg-ccttcaaaccagaaagggggaaaatgatacggtgtaaaatcgctcaattaaaaacacggggtgtaaaaatcgcacaattgacaa 327  Q
    ||||||||||||||| |||| ||| | |||| |||||||| |||  |||| ||||||| ||||||||||| | ||| || |||| |||||||||||||||    
T  6092902 ctaaaacacatgggggcctttaaatctgaaaaggggaaaaagatggggtgcaaaatcgttcaattaaaaatatgggatgcaaaa-tcgcacaattgacaa 6092804  T
Q  328 tagatagggggaaaa 342  Q
     ||||||||||||||    
T  6092803 aagatagggggaaaa 6092789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 240 - 337
Target Start/End: Original strand, 9823300 - 9823396
Alignment:
Q  240 ggggccttcaaaccagaaagggggaaaatgatacggtgtaaaatcgctcaattaaaaacacggggtgtaaaaatcgcacaattgacaatagatagggg 337  Q
    ||||||| |||| ||||||||||||||| |||  |||| ||||||||||  ||||||||| ||||||  ||||||||||||||| ||| |||||||||    
T  9823300 ggggcctccaaatcagaaagggggaaaaagatggggtgcaaaatcgctcgtttaaaaacatggggtg-caaaatcgcacaattggcaaaagatagggg 9823396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 177 - 337
Target Start/End: Complemental strand, 13026810 - 13026654
Alignment:
Q  177 ggcaaatattaaacgaagaca-gtcatcaaaatcatatacataatcactaaagctaaaacacatgggg--ccttcaaaccagaaagggggaaaatgatac 273  Q
    |||||| |||||| ||||||| ||||||||||||| | |||| |||||||||      ||||||||||  ||| |||| ||||||||||||||| |||      
T  13026810 ggcaaacattaaatgaagacacgtcatcaaaatcagacacatcatcactaaa------acacatggggggcctccaaatcagaaagggggaaaaagatgg 13026717  T
Q  274 ggtgtaaaatcgctcaattaaaaacacggggtgtaaaaatcgcacaattgacaatagatagggg 337  Q
    |||| ||||||||||  ||||||||| | ||||  ||||||||||||||| ||| |||||||||    
T  13026716 ggtgcaaaatcgctcgtttaaaaacatgaggtg-caaaatcgcacaattggcaaaagatagggg 13026654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 240 - 337
Target Start/End: Original strand, 13027220 - 13027316
Alignment:
Q  240 ggggccttcaaaccagaaagggggaaaatgatacggtgtaaaatcgctcaattaaaaacacggggtgtaaaaatcgcacaattgacaatagatagggg 337  Q
    ||||||| |||| ||||||||||||||| |||  |||| ||||||||||  ||||||||| ||||||  ||||||||||||||| ||| |||||||||    
T  13027220 ggggcctccaaatcagaaagggggaaaaagatggggtgcaaaatcgctcgtttaaaaacatggggtg-caaaatcgcacaattggcaaaagatagggg 13027316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 229 - 342
Target Start/End: Complemental strand, 13936847 - 13936736
Alignment:
Q  229 ctaaaacacatggggccttcaaaccagaaagggggaaaatgatacggtgtaaaatcgctcaattaaaaacacggggtgtaaaaatcgcacaattgacaat 328  Q
    |||||||| |||| ||||||||| |||||||||| |||| |||  |||| ||||||||||  ||||||| | |||||| |||| |||||||||||  ||     
T  13936847 ctaaaacatatggagccttcaaatcagaaaggggaaaaa-gatggggtgcaaaatcgctcgtttaaaaatatggggtgcaaaa-tcgcacaattggtaaa 13936750  T
Q  329 agatagggggaaaa 342  Q
    ||||||||||||||    
T  13936749 agatagggggaaaa 13936736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 229 - 334
Target Start/End: Complemental strand, 39723530 - 39723424
Alignment:
Q  229 ctaaaacacatgggg--ccttcaaaccagaaagggggaaaatgatacggtgtaaaatcgctcaattaaaaacacggggtgtaaaaatcgcacaattgaca 326  Q
    |||||||||||||||  ||| |||| ||||||||||||||| |||  |||| ||||||||||  ||||||||| ||| ||  ||||||||||||||| ||    
T  39723530 ctaaaacacatggggggcctccaaatcagaaagggggaaaaagatggggtgcaaaatcgctcgtttaaaaacatgggatg-caaaatcgcacaattggca 39723432  T
Q  327 atagatag 334  Q
    | ||||||    
T  39723431 aaagatag 39723424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 229 - 337
Target Start/End: Complemental strand, 3307466 - 3307357
Alignment:
Q  229 ctaaaacacat--ggggccttcaaaccagaaagggggaaaatgatacggtgtaaaatcgctcaattaaaaacacggggtgtaaaaatcgcacaattgaca 326  Q
    |||||||||||  ||||||| |||| ||||||||| ||||| |||  |||| |||||||||   ||||||| | ||| || |||| ||||||||||||||    
T  3307466 ctaaaacacatagggggcctccaaatcagaaagggagaaaaagatggggtgcaaaatcgcttgtttaaaaatatgggatgcaaaa-tcgcacaattgaca 3307368  T
Q  327 atagatagggg 337  Q
    | |||||||||    
T  3307367 aaagatagggg 3307357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 253 - 343
Target Start/End: Original strand, 41662354 - 41662444
Alignment:
Q  253 cagaaaggggg-aaaatgatacggtgtaaaatcgctcaattaaaaacacggggtgtaaaaatcgcacaattgacaatagatagggggaaaaa 343  Q
    ||||||||||| |||| |||  |||| ||||||||||||| ||||| | |||||| |||| ||||||||||| ||| |||||||||| ||||    
T  41662354 cagaaagggggcaaaaagatggggtgcaaaatcgctcaataaaaaagagggggtgcaaaa-tcgcacaattggcaaaagataggggggaaaa 41662444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 253 - 343
Target Start/End: Complemental strand, 43245974 - 43245884
Alignment:
Q  253 cagaaaggggg-aaaatgatacggtgtaaaatcgctcaattaaaaacacggggtgtaaaaatcgcacaattgacaatagatagggggaaaaa 343  Q
    ||||||||||| |||| |||  |||| ||||||||||||| ||||| | |||||| |||| ||||||||||  ||| |||||||||||||||    
T  43245974 cagaaagggggcaaaaagatggggtgcaaaatcgctcaataaaaaagagggggtgcaaaa-tcgcacaattatcaaaagatagggggaaaaa 43245884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 47; Significance: 9e-18; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 228 - 337
Target Start/End: Complemental strand, 7591329 - 7591220
Alignment:
Q  228 gctaaaacacatgggg-ccttcaaaccagaaagggggaaaatgatacggtgtaaaatcgctcaattaaaaacacggggtgtaaaaatcgcacaattgaca 326  Q
    |||||||||||||||| ||| |||| ||||||||||||||| |||  |||| ||||||||||  ||||||||| ||||||  ||||||||||||||| ||    
T  7591329 gctaaaacacatgggggcctccaaatcagaaagggggaaaaagatggggtgcaaaatcgctcgtttaaaaacatggggtg-caaaatcgcacaattggca 7591231  T
Q  327 atagatagggg 337  Q
    | |||||||||    
T  7591230 aaagatagggg 7591220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 184 - 337
Target Start/End: Original strand, 26842124 - 26842273
Alignment:
Q  184 attaaacgaagaca-gtcatcaaaatcatatacataatcactaaagctaaaacacatgggg--ccttcaaaccagaaagggggaaaatgatacggtgtaa 280  Q
    |||||| ||||||| ||||||||||||||| |||| |||||||||      ||||||||||  ||| |||| ||||||||||||||| |||  |||| ||    
T  26842124 attaaatgaagacacgtcatcaaaatcatacacatcatcactaaa------acacatggggggcctccaaatcagaaagggggaaaaagatggggtgcaa 26842217  T
Q  281 aatcgctcaattaaaaacacggggtgtaaaaatcgcacaattgacaatagatagggg 337  Q
    ||||||||  ||||||||| ||||||  ||||||||||||||| ||| |||||||||    
T  26842218 aatcgctcgtttaaaaacatggggtg-caaaatcgcacaattggcaaaagatagggg 26842273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 177 - 337
Target Start/End: Original strand, 2639361 - 2639517
Alignment:
Q  177 ggcaaatattaaacgaagaca-gtcatcaaaatcatatacataatcactaaagctaaaacacatgggg--ccttcaaaccagaaagggggaaaatgatac 273  Q
    |||||| |||||| ||||||| ||||||||||||| | |||| |||      ||||||||||||||||  ||| |||| ||||||||||||||| |||      
T  2639361 ggcaaacattaaatgaagacacgtcatcaaaatcagacacatcatc------gctaaaacacatggggggcctccaaatcagaaagggggaaaaagatgg 2639454  T
Q  274 ggtgtaaaatcgctcaattaaaaacacggggtgtaaaaatcgcacaattgacaatagatagggg 337  Q
    |||| ||||||||||  ||||||||| ||||||  ||||||||||||||| ||| |||||||||    
T  2639455 ggtgcaaaatcgctcgtttaaaaacatggggtg-caaaatcgcacaattggcaaaagatagggg 2639517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 177 - 335
Target Start/End: Original strand, 7591729 - 7591883
Alignment:
Q  177 ggcaaatattaaacgaagaca-gtcatcaaaatcatatacataatcactaaagctaaaacacatggggccttcaaaccagaaagggggaaaatgatacgg 275  Q
    |||||| |||||| ||||||| ||||||||||||| | |||| |||||||||    | ||  | ||||||| |||| |||||||||||||||  ||  ||    
T  7591729 ggcaaacattaaatgaagacacgtcatcaaaatcagacacatcatcactaaa----atacgtagggggcctccaaatcagaaagggggaaaaaaatgagg 7591824  T
Q  276 tgtaaaatcgctcaattaaaaacacggggtgtaaaaatcgcacaattgacaatagatagg 335  Q
    || ||||||||||  ||||||||| ||||||  ||||||||||||||||||| |||||||    
T  7591825 tgcaaaatcgctcgtttaaaaacatggggtg-caaaatcgcacaattgacaaaagatagg 7591883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 240 - 337
Target Start/End: Complemental strand, 26841702 - 26841606
Alignment:
Q  240 ggggccttcaaaccagaaagggggaaaatgatacggtgtaaaatcgctcaattaaaaacacggggtgtaaaaatcgcacaattgacaatagatagggg 337  Q
    ||||||| |||| ||||||||||||||| |||  |||| ||||||||||  ||||||||| ||||||  ||||||||||||||| ||| |||||||||    
T  26841702 ggggcctccaaatcagaaagggggaaaaagatggggtgcaaaatcgctcgtttaaaaacatggggtg-caaaatcgcacaattggcaaaagatagggg 26841606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 240 - 337
Target Start/End: Complemental strand, 2638935 - 2638839
Alignment:
Q  240 ggggccttcaaaccagaaagggggaaaatgatacggtgtaaaatcgctcaattaaaaacacggggtgtaaaaatcgcacaattgacaatagatagggg 337  Q
    ||||||| |||| ||||||||||||||| |||  |||| ||||||||||  ||||||| | ||||||  ||||||||||||||| ||| |||||||||    
T  2638935 ggggcctccaaatcagaaagggggaaaaagatggggtgcaaaatcgctcgtttaaaaatatggggtg-caaaatcgcacaattggcaaaagatagggg 2638839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 240 - 337
Target Start/End: Complemental strand, 18296191 - 18296095
Alignment:
Q  240 ggggccttcaaaccagaaagggggaaaatgatacggtgtaaaatcgctcaattaaaaacacggggtgtaaaaatcgcacaattgacaatagatagggg 337  Q
    ||||||| |||| |||||| |||||||| |||  |||| ||||||||||  ||||||||| |||||| |||| ||||||||||| ||| |||||||||    
T  18296191 ggggcctccaaatcagaaaaggggaaaaagatggggtgcaaaatcgctcgtttaaaaacatggggtgcaaaa-tcgcacaattggcaaaagatagggg 18296095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0328 (Bit Score: 46; Significance: 4e-17; HSPs: 2)
Name: scaffold0328
Description:

Target: scaffold0328; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 177 - 337
Target Start/End: Original strand, 6674 - 6830
Alignment:
Q  177 ggcaaatattaaacgaagaca-gtcatcaaaatcatatacataatcactaaagctaaaacacatgggg--ccttcaaaccagaaagggggaaaatgatac 273  Q
    |||||| |||||| ||||||| ||||||||||||| | |||| |||||||||      ||||||||||  ||| |||| ||||||||||||||| |||      
T  6674 ggcaaacattaaatgaagacacgtcatcaaaatcagacacatcatcactaaa------acacatggggggcctccaaatcagaaagggggaaaaagatgg 6767  T
Q  274 ggtgtaaaatcgctcaattaaaaacacggggtgtaaaaatcgcacaattgacaatagatagggg 337  Q
    |||| ||||||||||  ||||||||| ||||||  ||||||||||||||| ||| |||||||||    
T  6768 ggtgcaaaatcgctcgtttaaaaacatggggtg-caaaatcgcacaattggcaaaagatagggg 6830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0328; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 177 - 322
Target Start/End: Complemental strand, 6326 - 6186
Alignment:
Q  177 ggcaaatattaaacgaagaca-gtcatcaaaatcatatacataatcactaaagctaaaacacatgggg-ccttcaaaccagaaagggggaaaatgatacg 274  Q
    |||||| |||||| ||||||| ||||||||||||| | |||| |||||||||      |||||||||| ||| |||| ||||||||||||||| |||  |    
T  6326 ggcaaacattaaatgaagacaagtcatcaaaatcagacacatcatcactaaa------acacatgggggcctccaaatcagaaagggggaaaaagatggg 6233  T
Q  275 gtgtaaaatcgctcaattaaaaacacggggtgtaaaaatcgcacaatt 322  Q
    ||| ||||||||||| ||||||| | ||||||| ||||||||||||||    
T  6232 gtgcaaaatcgctcatttaaaaatatggggtgt-aaaatcgcacaatt 6186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 46; Significance: 4e-17; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 177 - 337
Target Start/End: Complemental strand, 44599664 - 44599508
Alignment:
Q  177 ggcaaatattaaacgaagaca-gtcatcaaaatcatatacataatcactaaagctaaaacacatgggg--ccttcaaaccagaaagggggaaaatgatac 273  Q
    |||||| |||||| ||||||| ||||||||||||| | |||| |||||||||      ||||||||||  ||| |||| ||||||||||||||| |||      
T  44599664 ggcaaacattaaatgaagacacgtcatcaaaatcagacacatcatcactaaa------acacatggggggcctccaaatcagaaagggggaaaaagatgg 44599571  T
Q  274 ggtgtaaaatcgctcaattaaaaacacggggtgtaaaaatcgcacaattgacaatagatagggg 337  Q
    |||| ||||||||||  ||||||||| ||||||  ||||||||||||||| ||| |||||||||    
T  44599570 ggtgcaaaatcgctcgtttaaaaacatggggtg-caaaatcgcacaattggcaaaagatagggg 44599508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 177 - 336
Target Start/End: Original strand, 8643646 - 8643800
Alignment:
Q  177 ggcaaatattaaacgaagaca-gtcatcaaaatcatatacataatcactaaagctaaaacacat-ggggccttcaaaccagaaagggggaaaatgatacg 274  Q
    |||||| |||||| ||||||| ||||||||||||| | |||| |||      |||||||||||| |||||||||||| ||||||||||||||| |||  |    
T  8643646 ggcaaaaattaaatgaagacatgtcatcaaaatcaaacacatcatc------gctaaaacacataggggccttcaaatcagaaagggggaaaaagatggg 8643739  T
Q  275 gtgtaaaatcgctcaattaaaaacacggggtgtaaaaatcgcacaattgacaatagataggg 336  Q
    ||| ||||||||||  |||| |||| ||||||  |||||||||||||||  || ||||||||    
T  8643740 gtgcaaaatcgctcgtttaataacatggggtg-caaaatcgcacaattggtaaaagataggg 8643800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 177 - 337
Target Start/End: Complemental strand, 13863488 - 13863332
Alignment:
Q  177 ggcaaatattaaacgaagaca-gtcatcaaaatcatatacataatcactaaagctaaaacacatgggg--ccttcaaaccagaaagggggaaaatgatac 273  Q
    |||||| |||||| ||||||| ||||||||||||| | |||| |||||||||      ||||||||||  ||| |||| ||||||| ||||||| |||      
T  13863488 ggcaaacattaaatgaagacacgtcatcaaaatcagacacatcatcactaaa------acacatggggggcctccaaatcagaaagagggaaaaagatgg 13863395  T
Q  274 ggtgtaaaatcgctcaattaaaaacacggggtgtaaaaatcgcacaattgacaatagatagggg 337  Q
    |||| ||||||||||  ||||||||| |||||| |||| ||||||||||| ||| |||||||||    
T  13863394 ggtgcaaaatcgctcgtttaaaaacatggggtgcaaaa-tcgcacaattggcaaaagatagggg 13863332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 240 - 337
Target Start/End: Original strand, 44600074 - 44600170
Alignment:
Q  240 ggggccttcaaaccagaaagggggaaaatgatacggtgtaaaatcgctcaattaaaaacacggggtgtaaaaatcgcacaattgacaatagatagggg 337  Q
    ||||||| |||| ||||||||||||||| |||  |||| ||||||||||  ||||||||| ||||||  ||||||||||||||| ||| |||||||||    
T  44600074 ggggcctccaaatcagaaagggggaaaaagatggggtgcaaaatcgctcgtttaaaaacatggggtg-caaaatcgcacaattggcaaaagatagggg 44600170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 177 - 337
Target Start/End: Original strand, 13863837 - 13863991
Alignment:
Q  177 ggcaaatattaaacgaagaca-gtcatcaaaatcatatacataatcactaaagctaaaacacat-ggggccttcaaaccagaaagggggaaaatgatacg 274  Q
    |||||| |||||| ||||||| ||||||||||||| | |||| |||||||||      |||||| ||||||| |||| ||||||||||||||| |||  |    
T  13863837 ggcaaacattaaatgaagacatgtcatcaaaatcagacacatcatcactaaa------acacatcggggcctccaaatcagaaagggggaaaaagatggg 13863930  T
Q  275 gtgtaaaatcgctcaattaaaaacacggggtgtaaaaatcgcacaattgacaatagatagggg 337  Q
    ||| ||||||||||  ||||||| | ||||||   |||||||||||||| ||| |||||||||    
T  13863931 gtgcaaaatcgctcgtttaaaaatatggggtg--caaatcgcacaattggcaaaagatagggg 13863991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 240 - 343
Target Start/End: Original strand, 46816250 - 46816352
Alignment:
Q  240 ggggccttcaaaccagaaagggggaaaatgatacggtgtaaaatcgctcaattaaaaacacggggtgtaaaaatcgcacaattgacaatagataggggga 339  Q
    ||||||||||||||||||||||| ||||||||  |||  ||||||||||  ||||||| | ||||||  ||||||||| |||||  || |||||| ||||    
T  46816250 ggggccttcaaaccagaaaggggaaaaatgatggggtacaaaatcgctcgtttaaaaatatggggtg-caaaatcgcataattggtaaaagatagcggga 46816348  T
Q  340 aaaa 343  Q
    ||||    
T  46816349 aaaa 46816352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 309 - 342
Target Start/End: Complemental strand, 6908259 - 6908226
Alignment:
Q  309 aaaatcgcacaattgacaatagatagggggaaaa 342  Q
    |||||||||||||| |||||||||||||||||||    
T  6908259 aaaatcgcacaattaacaatagatagggggaaaa 6908226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 46; Significance: 4e-17; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 177 - 337
Target Start/End: Original strand, 33829515 - 33829671
Alignment:
Q  177 ggcaaatattaaacgaagaca-gtcatcaaaatcatatacataatcactaaagctaaaacacatgggg--ccttcaaaccagaaagggggaaaatgatac 273  Q
    |||||| |||||| ||||||| ||||||||||||| | |||| |||||||||      ||||||||||  ||| |||| ||||||||||||||| |||      
T  33829515 ggcaaacattaaatgaagacacgtcatcaaaatcagacacatcatcactaaa------acacatggggggcctccaaatcagaaagggggaaaaagatgg 33829608  T
Q  274 ggtgtaaaatcgctcaattaaaaacacggggtgtaaaaatcgcacaattgacaatagatagggg 337  Q
    |||| ||||||||||  ||||||||| ||||||  ||||||||||||||| ||| |||||||||    
T  33829609 ggtgcaaaatcgctcgtttaaaaacatggggtg-caaaatcgcacaattggcaaaagatagggg 33829671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 240 - 337
Target Start/End: Complemental strand, 33829105 - 33829009
Alignment:
Q  240 ggggccttcaaaccagaaagggggaaaatgatacggtgtaaaatcgctcaattaaaaacacggggtgtaaaaatcgcacaattgacaatagatagggg 337  Q
    ||||||| |||| ||||||||||||||| |||  |||| ||||||||||  ||||||||| ||||||  ||||||||||||||| ||| |||||||||    
T  33829105 ggggcctccaaatcagaaagggggaaaaagatggggtgcaaaatcgctcgtttaaaaacatggggtg-caaaatcgcacaattggcaaaagatagggg 33829009  T

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Target: chr5 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 177 - 337
Target Start/End: Original strand, 18817490 - 18817646
Alignment:
Q  177 ggcaaatattaaacgaagaca-gtcatcaaaatcatatacataatcactaaagctaaaacacatggggc--cttcaaaccagaaagggggaaaatgatac 273  Q
    |||||| |||||| ||||||| ||||||||||||| | |||| |||      ||||||||||||||||   || |||| ||||||||||||||| |||      
T  18817490 ggcaaacattaaatgaagacacgtcatcaaaatcagacacatcatc------gctaaaacacatggggggtctccaaatcagaaagggggaaaaagatgg 18817583  T
Q  274 ggtgtaaaatcgctcaattaaaaacacggggtgtaaaaatcgcacaattgacaatagatagggg 337  Q
    |||| ||||||||||  ||||||||| ||||||  ||||||||||||||| ||| |||||||||    
T  18817584 ggtgcaaaatcgctcgtttaaaaacatggggtg-caaaatcgcacaattggcaaaagatagggg 18817646  T

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Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 240 - 337
Target Start/End: Complemental strand, 18817067 - 18816971
Alignment:
Q  240 ggggccttcaaaccagaaagggggaaaatgatacggtgtaaaatcgctcaattaaaaacacggggtgtaaaaatcgcacaattgacaatagatagggg 337  Q
    ||||||| |||| ||||||||||||||| |||  | || ||||||||||  ||||||||| ||||||  ||||||||||||||| ||| |||||||||    
T  18817067 ggggcctccaaatcagaaagggggaaaaagatgggatgcaaaatcgctcgtttaaaaacatggggtg-caaaatcgcacaattggcaaaagatagggg 18816971  T

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Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 229 - 335
Target Start/End: Original strand, 11351355 - 11351460
Alignment:
Q  229 ctaaaacacatgggg-ccttcaaaccagaaagggggaaaatgatacggtgtaaaatcgctcaattaaaaacacggggtgtaaaaatcgcacaattgacaa 327  Q
    ||||||||||||||| ||| |||| || |||||||||||| |||  |||||||||||||||  ||||||| | |||||| |||| ||||||||||| |||    
T  11351355 ctaaaacacatgggggcctccaaatcataaagggggaaaa-gatggggtgtaaaatcgctcgtttaaaaatatggggtgcaaaa-tcgcacaattggcaa 11351452  T
Q  328 tagatagg 335  Q
     |||||||    
T  11351453 aagatagg 11351460  T

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Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 253 - 323
Target Start/End: Complemental strand, 42919406 - 42919337
Alignment:
Q  253 cagaaagggggaaaatgatacggtgtaaaatcgctcaattaaaaacacggggtgtaaaaatcgcacaattg 323  Q
    |||||||||| ||||||||| |||| ||||||||||  ||||||||| | |||| ||||||||||||||||    
T  42919406 cagaaaggggaaaaatgatagggtgcaaaatcgctcgtttaaaaacatgtggtg-aaaaatcgcacaattg 42919337  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 309 - 342
Target Start/End: Complemental strand, 31569953 - 31569920
Alignment:
Q  309 aaaatcgcacaattgacaatagatagggggaaaa 342  Q
    ||||||||||||||||||| ||||||||||||||    
T  31569953 aaaatcgcacaattgacaaaagatagggggaaaa 31569920  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 229 - 337
Target Start/End: Complemental strand, 11350935 - 11350827
Alignment:
Q  229 ctaaaacacatgggg--ccttcaaaccagaaagggggaaaatgatacggtgtaaaatcgctcaattaaaaacacggggtgtaaaaatcgcacaattgaca 326  Q
    |||||||||||||||  ||| |||| || |||||||||||| |||  |||| ||||||||||  ||||||| | |||||| ||||   ||||||||| ||    
T  11350935 ctaaaacacatggggggcctccaaatcaaaaagggggaaaaagatggggtgcaaaatcgctcgtttaaaaatatggggtgcaaaa--tgcacaattggca 11350838  T
Q  327 atagatagggg 337  Q
    | |||||||||    
T  11350837 aaagatagggg 11350827  T

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Target: chr1 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 240 - 337
Target Start/End: Complemental strand, 6002352 - 6002256
Alignment:
Q  240 ggggccttcaaaccagaaagggggaaaatgatacggtgtaaaatcgctcaattaaaaacacggggtgtaaaaatcgcacaattgacaatagatagggg 337  Q
    ||||||| |||| ||||||||||||||| |||  |||| ||||||||||  ||||||||| ||||||  |||||| |||||||||||| |||||||||    
T  6002352 ggggcctccaaatcagaaagggggaaaaagatggggtgcaaaatcgctcgtttaaaaacatggggtg-caaaatcacacaattgacaaaagatagggg 6002256  T

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Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 240 - 337
Target Start/End: Complemental strand, 49284524 - 49284428
Alignment:
Q  240 ggggccttcaaaccagaaagggggaaaatgatacggtgtaaaatcgctcaattaaaaacacggggtgtaaaaatcgcacaattgacaatagatagggg 337  Q
    ||||||| |||| ||||||||||||||| |||  |||| ||||||||||  ||||||||| ||||||  ||||||||||||||| ||| |||||||||    
T  49284524 ggggcctccaaatcagaaagggggaaaaagatggggtgcaaaatcgctcgtttaaaaacatggggtg-caaaatcgcacaattggcaaaagatagggg 49284428  T

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Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 177 - 333
Target Start/End: Original strand, 49284934 - 49285086
Alignment:
Q  177 ggcaaatattaaacgaagaca-gtcatcaaaatcatatacataatcactaaagctaaaacacatgggg--ccttcaaaccagaaagggggaaaatgatac 273  Q
    |||||| |||||| ||||||| ||||||||||||| | |||| |||||||||      ||||||||||  ||| |||| ||||||||||||||| |||      
T  49284934 ggcaaacattaaatgaagacacgtcatcaaaatcagacacatcatcactaaa------acacatggggggcctccaaatcagaaagggggaaaaagatgg 49285027  T
Q  274 ggtgtaaaatcgctcaattaaaaacacggggtgtaaaaatcgcacaattgacaatagata 333  Q
    |||| |||||||||   ||||||||| ||||||  ||||||||||||||| ||| |||||    
T  49285028 ggtgcaaaatcgcttgtttaaaaacatggggtg-caaaatcgcacaattggcaaaagata 49285086  T

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Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 240 - 336
Target Start/End: Original strand, 6002833 - 6002928
Alignment:
Q  240 ggggccttcaaaccagaaagggggaaaatgatacggtgtaaaatcgctcaattaaaaacacggggtgtaaaaatcgcacaattgacaatagataggg 336  Q
    ||||||| |||| ||||||||||||||| |||  |||| ||||||||||  ||||||||| ||||||  |||||||||||||||  || ||||||||    
T  6002833 ggggcctccaaatcagaaagggggaaaaagatgaggtgcaaaatcgctcgtttaaaaacatggggtg-caaaatcgcacaattgcgaaaagataggg 6002928  T

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Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 253 - 343
Target Start/End: Original strand, 39691952 - 39692041
Alignment:
Q  253 cagaaagggggaaaatgatacggtgtaaaatcgctcaattaaaaacacggggtgtaaaaatcgcacaattgacaatagatagggggaaaaa 343  Q
    ||||||||||||||| |||| |||| |||||| | |  ||||||||| ||||||  ||||||||||||||||||| | |||||||| ||||    
T  39691952 cagaaagggggaaaaagatagggtgcaaaatcacacgtttaaaaacatggggtg-caaaatcgcacaattgacaaaatataggggggaaaa 39692041  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 253 - 342
Target Start/End: Original strand, 50615573 - 50615661
Alignment:
Q  253 cagaaagggggaaaatgatacggtgtaaaatcgctcaattaaaaacacggggtgtaaaaatcgcacaattgacaatagatagggggaaaa 342  Q
    |||||||||||||||  ||| || | ||||||||||| ||||||  | |||||| |||| |||||||||||||||   ||||||||||||    
T  50615573 cagaaagggggaaaactatagggggcaaaatcgctcatttaaaactatggggtgcaaaa-tcgcacaattgacaaactatagggggaaaa 50615661  T

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Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 253 - 342
Target Start/End: Original strand, 50623401 - 50623489
Alignment:
Q  253 cagaaagggggaaaatgatacggtgtaaaatcgctcaattaaaaacacggggtgtaaaaatcgcacaattgacaatagatagggggaaaa 342  Q
    |||||||||||||||  ||| || | ||||||||||| ||||||  | |||||| |||| |||||||||||||||   ||||||||||||    
T  50623401 cagaaagggggaaaactatagggggcaaaatcgctcatttaaaactatggggtgcaaaa-tcgcacaattgacaaactatagggggaaaa 50623489  T

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Target: scaffold0802 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: scaffold0802
Description:

Target: scaffold0802; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 253 - 343
Target Start/End: Original strand, 1371 - 1461
Alignment:
Q  253 cagaaaggggg-aaaatgatacggtgtaaaatcgctcaattaaaaacacggggtgtaaaaatcgcacaattgacaatagatagggggaaaaa 343  Q
    ||||||||||| |||| |||  |||| ||||||||||||  ||||| | |||||| |||| ||||||||||| ||| |||||||||||||||    
T  1371 cagaaagggggcaaaaagatggggtgcaaaatcgctcaaaaaaaaagagggggtgcaaaa-tcgcacaattggcaaaagatagggggaaaaa 1461  T

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Target: scaffold0802; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 269 - 343
Target Start/End: Complemental strand, 1204 - 1131
Alignment:
Q  269 gatacggtgtaaaatcgctcaattaaaaacacggggtgtaaaaatcgcacaattgacaatagatagggggaaaaa 343  Q
    |||| |||| ||||||||||||  ||||| | |||||| |||| |||||||||| |||| |||||||||||||||    
T  1204 gatagggtgcaaaatcgctcaaaaaaaaagagggggtgcaaaa-tcgcacaattaacaaaagatagggggaaaaa 1131  T

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Target: scaffold0110 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 253 - 342
Target Start/End: Original strand, 45758 - 45847
Alignment:
Q  253 cagaaaggggg-aaaatgatacggtgtaaaatcgctcaattaaaaacacggggtgtaaaaatcgcacaattgacaatagatagggggaaaa 342  Q
    ||||||||||| |||| |||  |||| ||||||||||||  ||||| | |||||| |||| ||||||||||| ||| ||||||||||||||    
T  45758 cagaaagggggcaaaaagatggggtgcaaaatcgctcaaaaaaaaagagggggtgcaaaa-tcgcacaattggcaaaagatagggggaaaa 45847  T

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