View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16562_low_8 (Length: 341)

Name: NF16562_low_8
Description: NF16562
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16562_low_8
NF16562_low_8
[»] scaffold0272 (1 HSPs)
scaffold0272 (16-341)||(1068-1393)
[»] chr6 (2 HSPs)
chr6 (18-341)||(15842087-15842410)
chr6 (129-315)||(14457790-14457976)
[»] chr1 (2 HSPs)
chr1 (163-316)||(10238090-10238242)
chr1 (139-248)||(42750131-42750240)
[»] chr3 (6 HSPs)
chr3 (28-341)||(21943341-21943654)
chr3 (112-203)||(47475178-47475269)
chr3 (171-258)||(26476204-26476291)
chr3 (226-341)||(43075191-43075306)
chr3 (133-183)||(20696371-20696421)
chr3 (129-206)||(49455452-49455529)
[»] chr4 (6 HSPs)
chr4 (109-341)||(29081615-29081847)
chr4 (171-270)||(39610058-39610157)
chr4 (130-206)||(8505717-8505793)
chr4 (163-203)||(9159247-9159287)
chr4 (117-241)||(13853024-13853148)
chr4 (112-236)||(55352107-55352231)
[»] chr2 (3 HSPs)
chr2 (112-236)||(38969611-38969735)
chr2 (283-341)||(40919701-40919759)
chr2 (139-248)||(44691711-44691820)
[»] scaffold0008 (1 HSPs)
scaffold0008 (117-203)||(58254-58340)
[»] chr8 (3 HSPs)
chr8 (212-341)||(29576355-29576484)
chr8 (170-257)||(31400983-31401070)
chr8 (232-334)||(13960278-13960380)
[»] chr5 (1 HSPs)
chr5 (112-236)||(3679655-3679779)
[»] chr7 (1 HSPs)
chr7 (111-236)||(6230754-6230879)


Alignment Details
Target: scaffold0272 (Bit Score: 326; Significance: 0; HSPs: 1)
Name: scaffold0272
Description:

Target: scaffold0272; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 16 - 341
Target Start/End: Complemental strand, 1393 - 1068
Alignment:
Q  16 aaaagaacgatcctaccgccaagactaacgaacttattttcccaattatttaatatacgagataataaatccaaaacaggttgccaaggagccactcttc 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1393 aaaagaacgatcctaccgccaagactaacgaacttattttcccaattatttaatatacgagataataaatccaaaacaggttgccaaggagccactcttc 1294  T
Q  116 ccggatttgcccttaccggtaagcccaaatacttgaacgggagacagccttcactacaattcaaaaaaccacaagccatctccataaaatccctctccac 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1293 ccggatttgcccttaccggtaagcccaaatacttgaacgggagacagccttcactacaattcaaaaaaccacaagccatctccataaaatccctctccac 1194  T
Q  216 attcactccaatcaaacaacttttaaggaaattcaccttcaattcggatgtcatctcgaaccttctcaacaaagctttcaaagtccaaagattttccacc 315  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1193 attcactccaatcaaacaacttttaaggaaattcaccttcaattcggatgtcatctcgaaccttctcaacaaagctttcaaagtccaaagattttccacc 1094  T
Q  316 gatgcctttccaatacaaagagtatc 341  Q
    ||||||||||||||||||||||||||    
T  1093 gatgcctttccaatacaaagagtatc 1068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 148; Significance: 5e-78; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 18 - 341
Target Start/End: Complemental strand, 15842410 - 15842087
Alignment:
Q  18 aagaacgatcctaccgccaagactaacgaacttattttcccaattatttaatatacgagataataaatccaaaacaggttgccaaggagccactcttccc 117  Q
    |||||| ||| |||| || ||||||| |||||||||||||||| |||| ||| ||||||  | |||||||||||  ||||||||||     ||||| |||    
T  15842410 aagaacaatcatacctcctagactaatgaacttattttcccaactattcaatctacgagcaagtaaatccaaaagcggttgccaagtcaaaactctcccc 15842311  T
Q  118 ggatttgcccttaccggtaagcccaaatacttgaacgggagacagccttcactacaattcaaaaaaccacaagccatctccataaaatccctctccacat 217  Q
    |||||| ||| ||||||||| |||||||||||||| || ||||| |||||||||||||||| |||| ||||||||||||||||||| |||||| | ||||    
T  15842310 ggattttcccctaccggtaaacccaaatacttgaaaggaagacacccttcactacaattcagaaaatcacaagccatctccataaactccctcgctacat 15842211  T
Q  218 tcactccaatcaaacaacttttaaggaaattcaccttcaattcggatgtcatctcgaaccttctcaacaaagctttcaaagtccaaagattttccaccga 317  Q
    |||| |||||||| |||||||| || ||||| ||||||||| |||||| |||||| ||||  ||||||||||||||||||||||| | ||| ||||||||    
T  15842210 tcaccccaatcaagcaactttttagaaaattaaccttcaatccggatgccatctcaaaccccctcaacaaagctttcaaagtccacaaattctccaccga 15842111  T
Q  318 tgcctttccaatacaaagagtatc 341  Q
     |||||||||||||||||||||||    
T  15842110 cgcctttccaatacaaagagtatc 15842087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 129 - 315
Target Start/End: Complemental strand, 14457976 - 14457790
Alignment:
Q  129 taccggtaagcccaaatacttgaacgggagacagccttcactacaattcaaaaaaccacaagccatctccataaaatccctctccacattcactccaatc 228  Q
    |||||| || ||||| |||||||| || | | | |||| |||||||||||||||    || ||||| |||||||| ||| || ||||||| | ||| |||    
T  14457976 taccggcaaacccaagtacttgaaaggaaaaaaaccttgactacaattcaaaaagtttcacgccatatccataaattccgtcgccacattaattcccatc 14457877  T
Q  229 aaacaacttttaaggaaattcaccttcaattcggatgtcatctcgaaccttctcaacaaagctttcaaagtccaaagattttccacc 315  Q
    |||||||| |||   ||||| ||||||||| |||||| |||||| || | ||| | |||||||||||||||||| | ||| ||||||    
T  14457876 aaacaactcttataaaaattaaccttcaatccggatgccatctcaaagcctcttagcaaagctttcaaagtccacaaattctccacc 14457790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 70; Significance: 2e-31; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 163 - 316
Target Start/End: Complemental strand, 10238242 - 10238090
Alignment:
Q  163 ccttcactacaattcaaaaaaccacaagccatctccataaaatccctctccacattcactccaatcaaacaacttttaaggaaattcaccttcaattcgg 262  Q
    ||||||||||||||||||||| | ||||||||||| |||||||| || ||||||||||| ||| |||||||||||||| | ||||| ||||||||| |||    
T  10238242 ccttcactacaattcaaaaaatcgcaagccatctcgataaaatctctttccacattcacccca-tcaaacaacttttatgaaaattaaccttcaatccgg 10238144  T
Q  263 atgtcatctcgaaccttctcaacaaagctttcaaagtccaaagattttccaccg 316  Q
    ||| |||||| || | ||||||||||||||| |  |||||||| || |||||||    
T  10238143 atgccatctcaaaacctctcaacaaagcttttagggtccaaaggttctccaccg 10238090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 139 - 248
Target Start/End: Original strand, 42750131 - 42750240
Alignment:
Q  139 cccaaatacttgaacgggagacagccttcactacaattcaaaaaaccacaagccatctccataaaatccctctccacattcactccaatcaaacaacttt 238  Q
    ||||||||||| ||||||||    |||| |||||||||||||||   |||||||||||||||||||||  |    ||||| || |||||||||||||| |    
T  42750131 cccaaatacttaaacgggaggtttccttgactacaattcaaaaagttacaagccatctccataaaatcatttggaacattgaccccaatcaaacaactct 42750230  T
Q  239 taaggaaatt 248  Q
    ||| ||||||    
T  42750231 taaagaaatt 42750240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 62; Significance: 9e-27; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 28 - 341
Target Start/End: Original strand, 21943341 - 21943654
Alignment:
Q  28 ctaccgccaagactaacgaacttattttcccaattatttaatatacgagataataaatccaaaacaggttgccaaggagccactcttcccggatttgccc 127  Q
    ||||| |||||||||| |||||||||  |||||||||| ||| || ||  ||| || ||||  |  |||||||||| ||   ||||||| |||||| |      
T  21943341 ctaccaccaagactaatgaacttattaccccaattattcaatctatgaattaacaagtccactagcggttgccaagtagtagctcttccgggatttccat 21943440  T
Q  128 ttaccggtaagcccaaatacttgaacgggagacagccttcactacaattcaaaaaaccacaagccatctccataaaatccctctccacattcactccaat 227  Q
      ||||||||||| |  || ||||| ||||| || ||||||||||||||||| ||| ||||  |||| |||||||| ||||||||||||||||| |  ||    
T  21943441 ccaccggtaagcctaggtatttgaaagggaggcaaccttcactacaattcaagaaatcacacaccatttccataaactccctctccacattcacccatat 21943540  T
Q  228 caaacaacttttaaggaaattcaccttcaattcggatgtcatctcgaaccttctcaacaaagctttcaaagtccaaagattttccaccgatgcctttcca 327  Q
    ||| |||||||||||||| || ||||||||  |||||| ||  || |  || || ||||| |||||||||||||||||||| |  ||||| | ||| |||    
T  21943541 caagcaacttttaaggaagtttaccttcaacccggatgccacttcaatactccttaacaatgctttcaaagtccaaagattcttgaccgaaggcttacca 21943640  T
Q  328 atacaaagagtatc 341  Q
    | || |||||||||    
T  21943641 aaaccaagagtatc 21943654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 112 - 203
Target Start/End: Complemental strand, 47475269 - 47475178
Alignment:
Q  112 cttcccggatttgcccttaccggtaagcccaaatacttgaacgggagacagccttcactacaattcaaaaaaccacaagccatctccataaa 203  Q
    ||||| |||||||| |  |||||||| ||||||||||| ||||||||||  |||| ||||||||||||||||  ||||||||| ||||||||    
T  47475269 cttcctggatttgcaccaaccggtaaccccaaatacttaaacgggagactcccttgactacaattcaaaaaagtacaagccatatccataaa 47475178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 171 - 258
Target Start/End: Original strand, 26476204 - 26476291
Alignment:
Q  171 acaattcaaaaaaccacaagccatctccataaaatccctctccacattcactccaatcaaacaacttttaaggaaattcaccttcaat 258  Q
    ||||||||||||| |||||||  | ||||||||||  ||  |||||||||| || |||||||||||||| |  ||||| |||||||||    
T  26476204 acaattcaaaaaatcacaagctctatccataaaatttctacccacattcacacctatcaaacaacttttgaaaaaattaaccttcaat 26476291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 226 - 341
Target Start/End: Original strand, 43075191 - 43075306
Alignment:
Q  226 atcaaacaacttttaaggaaattcaccttcaattcggatgtcatctcgaaccttctcaacaaagctttcaaagtccaaagattttccaccgatgcctttc 325  Q
    ||||||||||| |||   ||||||||||| ||  |||| | |||||| || | ||| | |||||| |||||||||||||||||||||| || ||| || |    
T  43075191 atcaaacaactcttataaaaattcacctttaacccggaagccatctcaaagcctctaagcaaagccttcaaagtccaaagattttccatcgttgctttcc 43075290  T
Q  326 caatacaaagagtatc 341  Q
    | ||||||| ||||||    
T  43075291 ccatacaaatagtatc 43075306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 133 - 183
Target Start/End: Complemental strand, 20696421 - 20696371
Alignment:
Q  133 ggtaagcccaaatacttgaacgggagacagccttcactacaattcaaaaaa 183  Q
    ||||| ||||||||||||||||||| ||  |||| ||||||||||||||||    
T  20696421 ggtaatcccaaatacttgaacgggatactcccttgactacaattcaaaaaa 20696371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 129 - 206
Target Start/End: Complemental strand, 49455529 - 49455452
Alignment:
Q  129 taccggtaagcccaaatacttgaacgggagacagccttcactacaattcaaaaaaccacaagccatctccataaaatc 206  Q
    |||||| | |||||| |||||||| || | ||| || ||||||||||||||||||  |||||||||  ||||||||||    
T  49455529 taccggaaggcccaagtacttgaaaggaatacacccctcactacaattcaaaaaattacaagccattgccataaaatc 49455452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 57; Significance: 9e-24; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 109 - 341
Target Start/End: Complemental strand, 29081847 - 29081615
Alignment:
Q  109 actcttcccggatttgcccttaccggtaagcccaaatacttgaacgggagacagccttcactacaattcaaaaaaccacaagccatctccataaaatccc 208  Q
    ||||| ||||||||||| |  ||||||||||| | ||| |  || ||||| |  |||| |||||||||||||||  || ||||||| |||||||| || |    
T  29081847 actctacccggatttgctcccaccggtaagcctagatagtgaaaagggaggctaccttgactacaattcaaaaactcataagccatatccataaagtctc 29081748  T
Q  209 tctccacattcactccaatcaaacaacttttaaggaaattcaccttcaattcggatgtcatctcgaaccttctcaacaaagctttcaaagtccaaagatt 308  Q
    | |||||||| |  || ||||| ||||| ||||||||||||||||||||| | || | ||| || || |  ||||||||||||||||||||| |||||||    
T  29081747 tatccacatttatccccatcaagcaactcttaaggaaattcaccttcaatccagacgccatttcaaaacccctcaacaaagctttcaaagtctaaagatt 29081648  T
Q  309 ttccaccgatgcctttccaatacaaagagtatc 341  Q
     ||||| || | ||| || |||||||| |||||    
T  29081647 ctccactgaaggcttccctatacaaagcgtatc 29081615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 171 - 270
Target Start/End: Complemental strand, 39610157 - 39610058
Alignment:
Q  171 acaattcaaaaaaccacaagccatctccataaaatccctctccacattcactccaatcaaacaacttttaaggaaattcaccttcaattcggatgtcatc 270  Q
    ||||||||||||| |||||||    ||| |||| |||||  |||||||||| || || ||||||||||||| |||||| || |||||| |||||||||||    
T  39610157 acaattcaaaaaatcacaagcgccttccttaaagtcccttcccacattcacacctataaaacaacttttaaagaaatttactttcaatccggatgtcatc 39610058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 130 - 206
Target Start/End: Original strand, 8505717 - 8505793
Alignment:
Q  130 accggtaagcccaaatacttgaacgggagacagccttcactacaattcaaaaaaccacaagccatctccataaaatc 206  Q
    |||||||  ||||||||||||||||||| ||  |||| ||||||| ||||||||  ||||||||| ||||| |||||    
T  8505717 accggtagtcccaaatacttgaacgggatacttcctttactacaactcaaaaaattacaagccatttccatgaaatc 8505793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 163 - 203
Target Start/End: Original strand, 9159247 - 9159287
Alignment:
Q  163 ccttcactacaattcaaaaaaccacaagccatctccataaa 203  Q
    |||||||||||||||||||||  ||||||||||||||||||    
T  9159247 ccttcactacaattcaaaaaattacaagccatctccataaa 9159287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 117 - 241
Target Start/End: Complemental strand, 13853148 - 13853024
Alignment:
Q  117 cggatttgcccttaccggtaagcccaaatacttgaacgggagacagccttcactacaattcaaaaaaccacaagccatctccataaaatccctctccaca 216  Q
    |||||| ||||  |||||||| ||||||||||| || || || |  |||| |||||||||||||||  ||||||||||| ||||||| |||  |  ||||    
T  13853148 cggattagcccccaccggtaatcccaaatacttaaatggaagcctcccttgactacaattcaaaaagtcacaagccatccccataaattcctccggcaca 13853049  T
Q  217 ttcactccaatcaaacaacttttaa 241  Q
    || || ||||||||| |||| ||||    
T  13853048 tttaccccaatcaaagaactcttaa 13853024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 112 - 236
Target Start/End: Complemental strand, 55352231 - 55352107
Alignment:
Q  112 cttcccggatttgcccttaccggtaagcccaaatacttgaacgggagacagccttcactacaattcaaaaaaccacaagccatctccataaaatccctct 211  Q
    |||| ||| |||||||  |||||||| ||||| | ||| || || | | ||||||| |||||||||| ||||   || |||  ||||||||| ||||| |    
T  55352231 cttctcgggtttgccccaaccggtaaacccaagtgcttaaatggtaaagagccttccctacaattcataaaattgcacgccgcctccataaactcccttt 55352132  T
Q  212 ccacattcactccaatcaaacaact 236  Q
    | ||||||||||||||||| |||||    
T  55352131 ctacattcactccaatcaagcaact 55352107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 49; Significance: 5e-19; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 112 - 236
Target Start/End: Complemental strand, 38969735 - 38969611
Alignment:
Q  112 cttcccggatttgcccttaccggtaagcccaaatacttgaacgggagacagccttcactacaattcaaaaaaccacaagccatctccataaaatccctct 211  Q
    |||| |||||| ||||  |||||||||||||||||||||||||| ||| ||||||| ||||| |||| ||||  ||| |||  ||||||||| |||||      
T  38969735 cttctcggattcgccccaaccggtaagcccaaatacttgaacggaagagagccttctctacagttcataaaattacacgccgcctccataaactcccttc 38969636  T
Q  212 ccacattcactccaatcaaacaact 236  Q
    | |||||||| ||||||||||||||    
T  38969635 caacattcaccccaatcaaacaact 38969611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 283 - 341
Target Start/End: Complemental strand, 40919759 - 40919701
Alignment:
Q  283 aacaaagctttcaaagtccaaagattttccaccgatgcctttccaatacaaagagtatc 341  Q
    |||||||||||||| |||||||||||| |||||| |||||| || ||||||||||||||    
T  40919759 aacaaagctttcaacgtccaaagatttgccaccgttgccttccctatacaaagagtatc 40919701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 139 - 248
Target Start/End: Complemental strand, 44691820 - 44691711
Alignment:
Q  139 cccaaatacttgaacgggagacagccttcactacaattcaaaaaaccacaagccatctccataaaatccctctccacattcactccaatcaaacaacttt 238  Q
    |||| |||||||||||| | ||  |||||  |||||||||||||   ||| |||||  ||||||| ||||| || |||||||  || |||||||||||||    
T  44691820 cccagatacttgaacggaatactaccttcgttacaattcaaaaagttacacgccataaccataaactccctttcaacattcaaccccatcaaacaacttt 44691721  T
Q  239 taaggaaatt 248  Q
    ||| ||||||    
T  44691720 taaagaaatt 44691711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 117 - 203
Target Start/End: Complemental strand, 58340 - 58254
Alignment:
Q  117 cggatttgcccttaccggtaagcccaaatacttgaacgggagacagccttcactacaattcaaaaaaccacaagccatctccataaa 203  Q
    |||||| ||||  |||||||| ||||||||||||||||||||||  |||||||||||||| |||||| |||| |||||  |||||||    
T  58340 cggattagcccccaccggtaaccccaaatacttgaacgggagactaccttcactacaattaaaaaaatcacacgccattgccataaa 58254  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 212 - 341
Target Start/End: Original strand, 29576355 - 29576484
Alignment:
Q  212 ccacattcactccaatcaaacaacttttaaggaaattcaccttcaattcggatgtcatctcgaaccttctcaacaaagctttcaaagtccaaagattttc 311  Q
    ||||||| || |||||||| |||||||| || ||||| ||||||||   ||||| ||||| ||| |  ||||| |||||||| || ||||||||||| ||    
T  29576355 ccacattgaccccaatcaagcaacttttcagaaaattaaccttcaacctggatgccatcttgaagcccctcaataaagctttgaaggtccaaagattctc 29576454  T
Q  312 caccgatgcctttccaatacaaagagtatc 341  Q
    |||  ||| |||| ||||||| ||||||||    
T  29576455 cactaatgtctttacaatacatagagtatc 29576484  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 170 - 257
Target Start/End: Complemental strand, 31401070 - 31400983
Alignment:
Q  170 tacaattcaaaaaaccacaagccatctccataaaatccctctccacattcactccaatcaaacaacttttaaggaaattcaccttcaa 257  Q
    |||||||||| ||  |||| |||||||||||||||||| || ||||||| || |  ||||| |||||||||| |||||| || |||||    
T  31401070 tacaattcaagaactcacacgccatctccataaaatccatcgccacatttacccttatcaagcaacttttaaagaaattaactttcaa 31400983  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 232 - 334
Target Start/End: Original strand, 13960278 - 13960380
Alignment:
Q  232 caacttttaaggaaattcaccttcaattcggatgtcatctcgaaccttctcaacaaagctttcaaagtccaaagattttccaccgatgcctttccaatac 331  Q
    ||||||||| | ||||| ||||||||  | || | ||| ||||| | |||||||||||| || || ||||||||||| |||| || ||||||||| ||||    
T  13960278 caacttttatgaaaattaaccttcaaacccgaagccatttcgaaacctctcaacaaagcctttaaggtccaaagattctccatcgttgcctttcctatac 13960377  T
Q  332 aaa 334  Q
    |||    
T  13960378 aaa 13960380  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 112 - 236
Target Start/End: Original strand, 3679655 - 3679779
Alignment:
Q  112 cttcccggatttgcccttaccggtaagcccaaatacttgaacgggagacagccttcactacaattcaaaaaaccacaagccatctccataaaatccctct 211  Q
    |||| ||||||||| |  ||||||||||||||||| ||||| || ||| | ||||| |||||||||| ||||   ||||||  ||||||| | || ||      
T  3679655 cttctcggatttgctccaaccggtaagcccaaatatttgaagggtagagaaccttccctacaattcataaaattgcaagccgcctccatacactctctac 3679754  T
Q  212 ccacattcactccaatcaaacaact 236  Q
    | |||||||| ||||||||||||||    
T  3679755 caacattcaccccaatcaaacaact 3679779  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 111 - 236
Target Start/End: Complemental strand, 6230879 - 6230754
Alignment:
Q  111 tcttcccggatttgcccttaccggtaagcccaaatacttgaacgggagacagccttcactacaattcaaaaaaccacaagccatctccataaaatccctc 210  Q
    ||||| ||||||||||| || ||| || ||||||||||||||||| ||    ||||| |||||||||||||||   || |||   |||||||| |||||     
T  6230879 tcttctcggatttgcccctatcggcaaacccaaatacttgaacggaagcattccttccctacaattcaaaaaattgcacgccgcatccataaactcccta 6230780  T
Q  211 tccacattcactccaatcaaacaact 236  Q
     | |||||||| |||||||| |||||    
T  6230779 ccaacattcaccccaatcaagcaact 6230754  T

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