View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16562_low_9 (Length: 338)
Name: NF16562_low_9
Description: NF16562
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16562_low_9 |
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| [»] scaffold0005 (1 HSPs) |
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Alignment Details
Target: scaffold0005 (Bit Score: 254; Significance: 1e-141; HSPs: 1)
Name: scaffold0005
Description:
Target: scaffold0005; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 6 - 323
Target Start/End: Complemental strand, 232671 - 232354
Alignment:
| Q |
6 |
gacatcatcagtggtccttttgacagaataattgcgccaagctctgcatcaagttcccatccgtaatttcaaccttaaacaacatttgctttccaacaan |
105 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
232671 |
gacatcattagtggtccttttgacagaataattgcgccaagctctgcatcaagttcccatccgtaatttcaaccttaaacaacattttctttccaacaaa |
232572 |
T |
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| Q |
106 |
nnnnnnnagatctgatggataatcacaattgtcgctagtttgcagaaatcaacaatggcatcaaattaggtgctacatagtgtggacattaagtatcacc |
205 |
Q |
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| T |
232571 |
aatttctagatcagatggataaccacaattgtcgctagtctgcataaatcaacaatggcatcaaattaggtgctacatagtgtggacatttagtatcacc |
232472 |
T |
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| Q |
206 |
tgactgggtgcatcaatcagatcatatacactcctgccaacataagtttggacattacgatcaaacaaaatgaaagttgttgatccggtagcatccatca |
305 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
232471 |
tgactgggtgcatcaatcagatcatgtacactcctgccaacataagtttggacattacgatcaaacaaaatgaaagttgttgatccggtagcatccatca |
232372 |
T |
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| Q |
306 |
cctgaccatgaactttgt |
323 |
Q |
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||||| |||| ||||||| |
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| T |
232371 |
cctgaacatggactttgt |
232354 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 254; Significance: 1e-141; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 6 - 323
Target Start/End: Original strand, 14584704 - 14585021
Alignment:
| Q |
6 |
gacatcatcagtggtccttttgacagaataattgcgccaagctctgcatcaagttcccatccgtaatttcaaccttaaacaacatttgctttccaacaan |
105 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
14584704 |
gacatcattagtggtccttttgacagaataattgcgccaagctctgcatcaagttcccatccgtaatttcaaccttaaacaacattttctttccaacaaa |
14584803 |
T |
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| Q |
106 |
nnnnnnnagatctgatggataatcacaattgtcgctagtttgcagaaatcaacaatggcatcaaattaggtgctacatagtgtggacattaagtatcacc |
205 |
Q |
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| T |
14584804 |
aatttctagatcagatggataaccacaattgtcgctagtctgcataaatcaacaatggcatcaaattaggtgctacatagtgtggacatttagtatcacc |
14584903 |
T |
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| Q |
206 |
tgactgggtgcatcaatcagatcatatacactcctgccaacataagtttggacattacgatcaaacaaaatgaaagttgttgatccggtagcatccatca |
305 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14584904 |
tgactgggtgcatcaatcagatcatgtacactcctgccaacataagtttggacattacgatcaaacaaaatgaaagttgttgatccggtagcatccatca |
14585003 |
T |
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| Q |
306 |
cctgaccatgaactttgt |
323 |
Q |
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| T |
14585004 |
cctgaacatggactttgt |
14585021 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 47; Significance: 8e-18; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 10 - 104
Target Start/End: Original strand, 49825263 - 49825356
Alignment:
| Q |
10 |
tcatcagtggtccttttgacagaataattgcgccaagctctgcatcaagttcccatccgtaatttcaaccttaaacaacatttgctttccaacaa |
104 |
Q |
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||||||| ||||||||||||| ||| ||||||||| | ||||| ||||||||||||||||||||||||||||| | |||||| |||||||||| |
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| T |
49825263 |
tcatcagatgtccttttgacagcatagttgcgccaat-tatgcattaagttcccatccgtaatttcaaccttaaatagcatttgttttccaacaa |
49825356 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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