View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16563_low_1 (Length: 863)
Name: NF16563_low_1
Description: NF16563
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16563_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 433; Significance: 0; HSPs: 10)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 433; E-Value: 0
Query Start/End: Original strand, 11 - 451
Target Start/End: Complemental strand, 43548895 - 43548455
Alignment:
| Q |
11 |
cagcacagacagcaattatcttgtcatctttctcgccctgaacatcataagaattagtggctgatcaataataatcagaagagaaattattgctatcttc |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43548895 |
cagcacagacagcaattatcttgtcatctttctcgccctgaacatcataagaattagtggctgatcaataataatcagaagagaaattattgctatcttc |
43548796 |
T |
|
| Q |
111 |
aaaatggaatgtctcacagacctgatcgatcataggcatgagtccaatagctttggcacggagaaagcaacctggaacaactggctcctgtttcaacaca |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43548795 |
aaaatggaatgtctcacagacctgatcgatcataggcatgagcccaatagctttggcacggagaaagcaacctggaacaactggctcctgtttcaacaca |
43548696 |
T |
|
| Q |
211 |
attaagaattagcgctccaaagcagtaaagacaaatctaatgcactaatactagagtctagatagatgaagtcgacttcttacttgatcctctttatgaa |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43548695 |
attaagaattagcgctccaaagcagtaaagacaaatctaatgcactaatactagagtctagatagatgaagtcgacttcttacttgatcctctttatgaa |
43548596 |
T |
|
| Q |
311 |
ttgtttccatgcattattgtcagattgtattagaggagtaatattttgaaatttactcacatttgcacattttgatcacctccttggaagtaaaagataa |
410 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43548595 |
ttgtttccatgcattattgtcagattgtattagaggagtaatattttgaaatttactcacatttgcacattttgatcacctccttggaagtaaaagataa |
43548496 |
T |
|
| Q |
411 |
ggtttcatatgccaaggattttaaaattcattaattacttc |
451 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||| |
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|
| T |
43548495 |
ggtttcatatgccaaggatttttaaattcattaattacttc |
43548455 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 470 - 847
Target Start/End: Complemental strand, 43548464 - 43548087
Alignment:
| Q |
470 |
taattacttcttaataagatattagtattatctaaatatattcgttaaaatgttgacacccaccaacatcttgcatctgaaatcacagttagccagatgt |
569 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43548464 |
taattacttcttaataagatattagtattatctaaatatattcgttaaaatgttgacacccaccaacatcttgcatctgaaatcacagttagccagatgt |
43548365 |
T |
|
| Q |
570 |
tgactattattatacaatccatttttgaaaaggaaaaagaaaagtacaagagctctagttcaaaatattgataaatgaagtttcattataaggaggctag |
669 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43548364 |
tgactattattatacaatccatttttgaaaaggaaaaagaaaagtacaagagctctagttcaaaatattgataaatgaagtttcattataaggaggctag |
43548265 |
T |
|
| Q |
670 |
atcctagatgatctaactttgatgatattttcagtacatacaggtttcctttcggaattcgatgaagaactaggcaaatcgcataacaactaataacaga |
769 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43548264 |
atcctagatgatctaactttgatgatattttcagtacatacaggtttcctttcggaattcgatgaagaactaggcaaatcgcataacaactaataacaga |
43548165 |
T |
|
| Q |
770 |
ttccaaatttaagaacaggattgcataaatatgtagcgcagattttatcttcatatgaaattatcacacaaggtaagt |
847 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
43548164 |
ttccaaatttaagaacaggattgcataaatatgtagcgcagattttatcttcatatgaaattatcacacaaggtaagt |
43548087 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 12 - 241
Target Start/End: Complemental strand, 50901304 - 50901072
Alignment:
| Q |
12 |
agcacagacagcaattatcttgtcatctttctcgccctgaacatcataagaattagtggctgatcaataataatcagaagagaaattattgctatcttca |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||| || |||||| ||||||||| ||||||||||||||||| || || |
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|
| T |
50901304 |
agcacagacagcaattatcttgtcatctttctcgccctgagtttcataagaattagcggttgatcattaataatcaaaagagaaattattgctagctaca |
50901205 |
T |
|
| Q |
112 |
aaatggaatgtctcacaga-cctgatcgatcataggcatgagtccaatagctttggcacggagaaagcaacctggaacaactggct-cctgtttcaac-a |
208 |
Q |
| |
|
|||||||| |||||||| | ||||||| ||||| | ||||||||||||||| |||||| |||||||||||||||||| ||| |||| |||||| || | | |
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|
| T |
50901204 |
aaatggaaggtctcacatagcctgatcaatcatcgacatgagtccaatagc-ttggcatggagaaagcaacctggaagaaccggctccctgttccaccaa |
50901106 |
T |
|
| Q |
209 |
caattaagaattagcgct-ccaaagcagtaaaga |
241 |
Q |
| |
|
|||||||| |||||| | ||||||||||||||| |
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|
| T |
50901105 |
caattaagtattagccatcccaaagcagtaaaga |
50901072 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 88; E-Value: 8e-42
Query Start/End: Original strand, 11 - 202
Target Start/End: Complemental strand, 29369119 - 29368928
Alignment:
| Q |
11 |
cagcacagacagcaattatcttgtcatctttctcgccctgaacatcataagaattagtggctgatcaataataatcagaagagaaattattgctatcttc |
110 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||| ||||||| ||||||||||||||| ||||| ||||| || | || |||| ||||||| |||| |
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|
| T |
29369119 |
cagcacagacagcaatgatcttgtcatctttctcaccctgaatttcataagaattagtgattgatcgataatgataaaaaaagaagttattgccatctgg |
29369020 |
T |
|
| Q |
111 |
aaaatggaatgtctcacagacctgatcgatcataggcatgagtccaatagctttggcacggagaaagcaacctggaacaactggctcctgtt |
202 |
Q |
| |
|
||| ||||||| ||| | |||||||| ||||| |||||||| ||||||||||||||||| |||||||| ||||||| |||||||||||||| |
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|
| T |
29369019 |
gaaagggaatgtttcagatacctgatcaatcatgggcatgagaccaatagctttggcacgaagaaagcagcctggaagaactggctcctgtt |
29368928 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 762 - 847
Target Start/End: Complemental strand, 50901015 - 50900930
Alignment:
| Q |
762 |
ataacagattccaaatttaagaacaggattgcataaatatgtagcgcagattttatcttcatatgaaattatcacacaaggtaagt |
847 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||| |
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|
| T |
50901015 |
ataacagattccaaatttgggaacaggattgcataaatatgtagtgcagatttgatcttcatatgaaattatcacacaaggtaagt |
50900930 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 705 - 840
Target Start/End: Complemental strand, 29368480 - 29368348
Alignment:
| Q |
705 |
acatacaggtttcctttcggaattcgatgaagaactaggcaaatcgcataacaactaataacagattccaaatttaagaacaggattgcataaatatgta |
804 |
Q |
| |
|
|||| |||||||||||| ||||||| ||||| || ||||||| | ||||||||||||||||| ||| ||||| ||||||| |||||| |||||||| |
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|
| T |
29368480 |
acatgcaggtttccttttggaattcaatgaataa---ggcaaattgtttaacaactaataacagaatcctaatttgagaacagaattgcacaaatatgtt |
29368384 |
T |
|
| Q |
805 |
gcgcagattttatcttcatatgaaattatcacacaa |
840 |
Q |
| |
|
| ||| |||| |||||| |||| ||||||||||||| |
|
|
| T |
29368383 |
gtgcacatttgatcttcttatggaattatcacacaa |
29368348 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 483 - 587
Target Start/End: Complemental strand, 29368655 - 29368551
Alignment:
| Q |
483 |
ataagatattagtattatctaaatatattcgttaaaatgttgacacccaccaacatcttgcatctgaaatcacagttagccagatgttgactattattat |
582 |
Q |
| |
|
|||||||| ||| || ||| ||||||||| |||||||| || | | |||||||| |||||||| ||||||||||| | |||||| ||||||||||||||| |
|
|
| T |
29368655 |
ataagatactagaatcatcaaaatatattagttaaaatattaagaaccaccaacttcttgcatttgaaatcacagctggccagaagttgactattattat |
29368556 |
T |
|
| Q |
583 |
acaat |
587 |
Q |
| |
|
||||| |
|
|
| T |
29368555 |
acaat |
29368551 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 269 - 371
Target Start/End: Complemental strand, 50909917 - 50909815
Alignment:
| Q |
269 |
tagatagatgaagtcgacttcttacttgatcctctttatgaattgtttccatgcattattgtcagattgtattagaggagtaatattttgaaatttactc |
368 |
Q |
| |
|
||||||||||||||| | | |||||||||||||||| |||||| || ||||||||||||| | |||||||||||| || ||||||| |||||||||| |
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|
| T |
50909917 |
tagatagatgaagtcatcgtattacttgatcctctttttgaattattaccatgcattattgctaaattgtattagagtagccatattttcaaatttactc |
50909818 |
T |
|
| Q |
369 |
aca |
371 |
Q |
| |
|
||| |
|
|
| T |
50909817 |
aca |
50909815 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 290 - 391
Target Start/End: Complemental strand, 29368851 - 29368751
Alignment:
| Q |
290 |
ttacttgatcctctttatgaattgtttccatgcattattgtcagattgtattagaggagtaatattttgaaatttactcacatttgcacattttgatcac |
389 |
Q |
| |
|
|||||| ||||||||| |||| |||| ||||| |||||||| | ||||||||| || || || |||| ||||||||||||||||||||||||||| ||| |
|
|
| T |
29368851 |
ttacttcatcctctttttgaagtgttaccatgtattattgtgaaattgtattacagtagccat-ttttaaaatttactcacatttgcacattttgaacac |
29368753 |
T |
|
| Q |
390 |
ct |
391 |
Q |
| |
|
|| |
|
|
| T |
29368752 |
ct |
29368751 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 13 - 53
Target Start/End: Complemental strand, 50910105 - 50910065
Alignment:
| Q |
13 |
gcacagacagcaattatcttgtcatctttctcgccctgaac |
53 |
Q |
| |
|
||||||||||| | ||||||||||||||||||||||||||| |
|
|
| T |
50910105 |
gcacagacagcgaatatcttgtcatctttctcgccctgaac |
50910065 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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