View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16563_low_11 (Length: 251)
Name: NF16563_low_11
Description: NF16563
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16563_low_11 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 8 - 219
Target Start/End: Original strand, 40514887 - 40515098
Alignment:
| Q |
8 |
cgaagaaaatcaaagttattaccgatcagtttgacttatagtatgaaatatgaatcatgattgacaactgtgtaaatcataaccaattgactttaaattt |
107 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40514887 |
cgaataaaatcaaagttattaccgatcagtttgacttatagtatgaaatatgaatcatgattgacaactgtgtaaatcataaccaattgactttaaattt |
40514986 |
T |
|
| Q |
108 |
tttacaccatcaatctatatgcattactccaattgttatcattctcattatatttatgatgataatgatgaatacatgtcaatacattatagtagtactt |
207 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
40514987 |
tttacaccatcaatctatatgaattactccaattgttatcattctcattatatttatgatgataatgatgaatacatgtcaatgcattatagtagtactt |
40515086 |
T |
|
| Q |
208 |
gataaatatact |
219 |
Q |
| |
|
||||||| |||| |
|
|
| T |
40515087 |
gataaatgtact |
40515098 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University