View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16563_low_12 (Length: 249)
Name: NF16563_low_12
Description: NF16563
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16563_low_12 |
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Alignment Details
Target: chr8 (Bit Score: 210; Significance: 1e-115; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 149885 - 150121
Alignment:
| Q |
1 |
atttcatgatggatcaatcatggtcaaaattgtagtaattagattaattaatttactccgtatagcgcatttggaggcagtggtatgaagacttaatatc |
100 |
Q |
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| T |
149885 |
atttcatgatggatcgatcatggtcaaaattgtagtaattagattaattaatttactccgtatagcgcatttggaggcagtggtatgaagacttaatatc |
149984 |
T |
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| Q |
101 |
agtcaacactcattgagtcttttagc-aacaataaaagcacacaaccatatatagtatacctgctggtcacaaatattgctcaagtgaagctcactacga |
199 |
Q |
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| T |
149985 |
agtcaacactcattgagtcttttagcaaacaataaaagcacacaaccatatatagtatac---ctggtcacaaatattgctcaagtgaagctcactacga |
150081 |
T |
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| Q |
200 |
ttcctatctaccaaccaacaggttcaatatctatgttcat |
239 |
Q |
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| T |
150082 |
ttcctatctaccaaccaacaggttcaaaatctatgttcat |
150121 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 76 - 239
Target Start/End: Original strand, 157849 - 158015
Alignment:
| Q |
76 |
ggcagtggtatgaagacttaatatcagtcaacactcattgagtcttttagcaacaataaaagcaca-------caaccatatatagtatacctgctggtc |
168 |
Q |
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| T |
157849 |
ggcagtggtatgaagacttaacatcagtcaacactcattgagtctttcagcaacaataaaagcacatacattgcacacaagcatagcacac---ctggtg |
157945 |
T |
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| Q |
169 |
acaaatattgctcaagtgaagctcactacgattcctatctaccaaccaacaggttcaatatctatgttcat |
239 |
Q |
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| T |
157946 |
acaactattgctcaagtgaagctcacta-aattcctatctaccaaccaacaggttcagaatctatgttcat |
158015 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 47 - 80
Target Start/End: Complemental strand, 48088005 - 48087972
Alignment:
| Q |
47 |
attaatttactccgtatagcgcatttggaggcag |
80 |
Q |
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| T |
48088005 |
attaatttactccgtatatcgcatttggaggcag |
48087972 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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