View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16563_low_14 (Length: 222)
Name: NF16563_low_14
Description: NF16563
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16563_low_14 |
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Alignment Details
Target: chr5 (Bit Score: 190; Significance: 1e-103; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 207
Target Start/End: Complemental strand, 36890992 - 36890784
Alignment:
| Q |
1 |
ataggattcgcttataccatgaaaggttgcttgcacttttgaaggctgaaggtctagtggcaaggactttgagaggagttgattcttctttgttcagatg |
100 |
Q |
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| T |
36890992 |
ataggattcgcttataccatgaaaggttgcttgcacttttgaaggctgaaggtctagtggcaaggactttgagaggagttgattcttctttgttcagatg |
36890893 |
T |
|
| Q |
101 |
tgtgcttaggaaatcatagtaatgtactactatcacagccaaatctgtttcatcagataacacatatgtataaccaattatagaaca--atatgtcaata |
198 |
Q |
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| T |
36890892 |
tgtgcttaggaaatcatagtaatgtactactatcacagccaaatctgtttcatcacataacacatatgtataaccaattatagcacaatatatgtcaata |
36890793 |
T |
|
| Q |
199 |
tctgtttct |
207 |
Q |
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||||||||| |
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| T |
36890792 |
tctgtttct |
36890784 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 117; E-Value: 9e-60
Query Start/End: Original strand, 1 - 149
Target Start/End: Complemental strand, 36877925 - 36877777
Alignment:
| Q |
1 |
ataggattcgcttataccatgaaaggttgcttgcacttttgaaggctgaaggtctagtggcaaggactttgagaggagttgattcttctttgttcagatg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||| |
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| T |
36877925 |
ataggattcgcttataccatgaaaggttgcttgcacttttgaaggctgaaggtctagctgcaaggactttgagaggagttgatccttctttgttcagatg |
36877826 |
T |
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| Q |
101 |
tgtgcttaggaaatcatagtaatgtactactatcacagccaaatctgtt |
149 |
Q |
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|||||| ||| ||||||| | |||||||| ||||||||||||||||||| |
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| T |
36877825 |
tgtgctgaggtaatcatattgatgtactattatcacagccaaatctgtt |
36877777 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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