View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16563_low_16 (Length: 207)
Name: NF16563_low_16
Description: NF16563
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16563_low_16 |
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Alignment Details
Target: chr5 (Bit Score: 52; Significance: 5e-21; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 75 - 126
Target Start/End: Original strand, 508231 - 508282
Alignment:
| Q |
75 |
catctttgatgaaaacgttttagaccttggagacaaaggtagattacatgtc |
126 |
Q |
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| T |
508231 |
catctttgatgaaaacgttttagaccttggagacaaaggtagattacatgtc |
508282 |
T |
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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 43
Target Start/End: Original strand, 508171 - 508199
Alignment:
| Q |
15 |
gaaatgaaaaacagatatggacaaatcaa |
43 |
Q |
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| T |
508171 |
gaaatgaaaaacagatatggacaaatcaa |
508199 |
T |
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