View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16563_low_4 (Length: 502)
Name: NF16563_low_4
Description: NF16563
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16563_low_4 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 478; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 478; E-Value: 0
Query Start/End: Original strand, 1 - 502
Target Start/End: Original strand, 10858486 - 10858987
Alignment:
| Q |
1 |
tacaggatgtatggcatggcttgccagtcccacactcttgctttggaaatttggaggaattaattgtggacgggtgccaatttttatccgaagtactacc |
100 |
Q |
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| T |
10858486 |
tacaggatgtatggcatggcttgccagtcccacaatcttgctttggaaatttggaggaattaattgtggacgggtgccaatttttatccgaagtactacc |
10858585 |
T |
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| Q |
101 |
atccaatttacttcctttcttaacaaaaatggaaaagttggcagttcgaaattgtggttttgtgaaaaccatatttgatgtgagacgtataacagaagac |
200 |
Q |
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| T |
10858586 |
atccaatttacttcctttcttaacaaaaatggaaaaattggcagttcgaaattgtagttctgtgaaaaccatatttgatgtgagacgtataacagaagac |
10858685 |
T |
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| Q |
201 |
agaaaaatgaaaaccaagggaccagccctgatgcccttccctttttccctgaaggtattgactttagagcagttgccaaatttgaagaatgtttggaatg |
300 |
Q |
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| T |
10858686 |
agaaaaatgaaaaccaagggaccagccctgatgcccttccctttttccctgaaggtattgactttagagcagttgccaaatttggagaatgtttggaatg |
10858785 |
T |
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| Q |
301 |
aagatcctcatggaattctaacaattgaacttctaaaacaagtatatgttgatgactgtaaaggccttacaagtttgttcccagcctcagtagccaaaga |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
10858786 |
aagatcctcatggaattctaacaattgaacttctaaaacaagtatatgttgatgactgtaaaggccttataagtttgttcccagcctcagtagccaaaga |
10858885 |
T |
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| Q |
401 |
tcttgtgaaacttgaagatctacacgtgaaacactgtgaagagctgatggttattgttgcagagaataatgcatatcccaaaggaacaattttggagagt |
500 |
Q |
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| T |
10858886 |
tcttgtgaaacttgaagatctacacgtgaaacactgtgaagagctgatggttattgttgcagagaataatgcatatcccaaaggaacaattttggagagt |
10858985 |
T |
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| Q |
501 |
tt |
502 |
Q |
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| T |
10858986 |
tt |
10858987 |
T |
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