View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16563_low_5 (Length: 497)
Name: NF16563_low_5
Description: NF16563
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16563_low_5 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 330; Significance: 0; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 15 - 356
Target Start/End: Original strand, 30343109 - 30343450
Alignment:
| Q |
15 |
gagatgaagggaaagaaggaagagagaggttaatgatgttttgtgtgttgttgaagcatttgtagaagaagagttttcggaggtaggagaaagaggtgaa |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30343109 |
gagatgaagggaaagaaggaagagagaggttaatgatgttttgtgtgttgttgaagcatttgtagaagaagagttttcggaggtaggagaaagaggtgaa |
30343208 |
T |
|
| Q |
115 |
gagagttgggttgagagtagcattagaggaacaaggtggggttggtgtttcatcggaaacgtaaccgaagttgagttcaacaatgtgtggttggttttga |
214 |
Q |
| |
|
|||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30343209 |
gagagttgggttgagagtggcgttagaggaacaaggtggggttggtgtttcatcggaaacgtaaccgaagttgagttcaacaatgtgtggttggttttga |
30343308 |
T |
|
| Q |
215 |
tcatagtcgcaaacaacgccgtgtggggcggagagacagagatcatcggggaaaagtgtttgccatggaatggttgggttgagggagttgagaacattgt |
314 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30343309 |
tcatagtcgcaaacaacgccgtgtggagcggagagacagagatcatcggggaaaagtgtttgccatggaatggttgggttgagggagttgagaacattgt |
30343408 |
T |
|
| Q |
315 |
agagtgctttttgttctgttgggtcaaggagaggttggtctt |
356 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30343409 |
agagtgctttttgttctgttgggtcaaggagaggttggtctt |
30343450 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 397 - 478
Target Start/End: Original strand, 30343488 - 30343581
Alignment:
| Q |
397 |
tgttgttgaagtcgaaaatagagccattggaatgaatatgaatgtttgg------------gagtagaaaagtggaataagagaatgtggtttt |
478 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
30343488 |
tgttgttgaaatcgaaaatagagccattggaatgaatatgaatgtttggttggttttttgagagtagaaaagtggaataagagaatgtggtttt |
30343581 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 289 - 338
Target Start/End: Complemental strand, 30325540 - 30325491
Alignment:
| Q |
289 |
tgggttgagggagttgagaacattgtagagtgctttttgttctgttgggt |
338 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
30325540 |
tgggttgatggagttgagaacattgtagagtgctttttgttcggttgggt |
30325491 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 289 - 338
Target Start/End: Complemental strand, 30337177 - 30337128
Alignment:
| Q |
289 |
tgggttgagggagttgagaacattgtagagtgctttttgttctgttgggt |
338 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
30337177 |
tgggttgatggagttgagaacattgtagagtgctttttgttcagttgggt |
30337128 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 56 - 129
Target Start/End: Complemental strand, 30333045 - 30332972
Alignment:
| Q |
56 |
tgtgtgttgttgaagcatttgtagaagaagagttttcggaggtaggagaaagaggtgaagagagttgggttgag |
129 |
Q |
| |
|
|||||||||||||||||||||| ||| |||||| ||||||||| ||||| ||| ||||| |||||||||| |
|
|
| T |
30333045 |
tgtgtgttgttgaagcatttgtggaatgtgagtttgcggaggtagttgaaaggggttaagagtattgggttgag |
30332972 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University