View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16563_low_6 (Length: 421)
Name: NF16563_low_6
Description: NF16563
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16563_low_6 |
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Alignment Details
Target: chr6 (Bit Score: 281; Significance: 1e-157; HSPs: 12)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 1 - 296
Target Start/End: Original strand, 30955516 - 30955809
Alignment:
| Q |
1 |
ttggatatacaataagctagaaaaggagagtgatttgagacctgacatagtgatggccattgaagaaaatgagattgcaaaaggaatgaccattgttggt |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30955516 |
ttggatatacaataagctagaaaaggagagtgatttgagacctgacatagtgatggccattgaagaaaatgagattgcaaaaggaatgaccattgttggt |
30955615 |
T |
|
| Q |
101 |
ttatggtgcattcaaacattgccaaatgatcgaccaacaatgagtagagtgattgaaatgttggaaggtagcatgaatgtccttgaaataccaccaaaac |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30955616 |
ttatggtgcattcaaacattgccaaatgatcgaccaacaatgagtagagtgattgaaatgttggaaggtagcatgaatgtccttgaaataccaccaaaac |
30955715 |
T |
|
| Q |
201 |
ctttggtttcttctcctactagatcattattggaatcttcaacttcttgaaatttggatctattagtatatatttcaagttaacttttcattttgt |
296 |
Q |
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| T |
30955716 |
ctttggtttcttctcctactagatcattattggaatcttcaacttcttgaaatttggatctataag--tatatttcaagttaacttttcattttgt |
30955809 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 1 - 407
Target Start/End: Original strand, 30945256 - 30945660
Alignment:
| Q |
1 |
ttggatatacaataagctagaaaaggagagtgatttgagacctgacatagtgatggccattgaagaaaatgagattgcaaaaggaatgaccattgttggt |
100 |
Q |
| |
|
||||||||||||||||||||||| ||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
30945256 |
ttggatatacaataagctagaaacggatagtgatttgagatctgacatagtgatggccattgaagaaaatgagattgcaaaaggaatgactattgttggt |
30945355 |
T |
|
| Q |
101 |
ttatggtgcattcaaacattgccaaatgatcgaccaacaatgagtagagtgattgaaatgttggaaggtagcatgaatgtccttgaaataccaccaaaac |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
30945356 |
ttatggtgcattcaaacattgccaaatgatcgaccaacaatgagtagagtgattgaaatgttggaaggtagcatgaatatccttgaaataccaccaaaac |
30945455 |
T |
|
| Q |
201 |
ctttggtttcttctcctactagatcattattggaatcttcaacttcttgaaatttggatctattagtatatatttcaagttaacttttcattttgtnnnn |
300 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||| |
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| T |
30945456 |
ctttggtttcttctcctacaagatcattattggaatcttcaacttcttgaaatttggatctataag--tatatttcaagttaacttttcattttgtaaaa |
30945553 |
T |
|
| Q |
301 |
nnnnnnnnnnggtatgttcttcataatacttttttcgtacttnnnnnnnnnnnnnnnnnnggcaagtagattacatatatgtgattcaaataccaatgtg |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
30945554 |
aaatgaaaaaggtatgttcttcataatacttttttcgtacttttattattattattattaggcaagtagattacatatatgtgattcaaataccaatgtg |
30945653 |
T |
|
| Q |
401 |
atctatg |
407 |
Q |
| |
|
||||||| |
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|
| T |
30945654 |
atctatg |
30945660 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 62 - 255
Target Start/End: Original strand, 31230110 - 31230303
Alignment:
| Q |
62 |
gaagaaaatgagattgcaaaaggaatgaccattgttggtttatggtgcattcaaacattgccaaatgatcgaccaacaatgagtagagtgattgaaatgt |
161 |
Q |
| |
|
|||||| |||| ||||||| || |||||||||| ||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||| |
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| T |
31230110 |
gaagaagatgaaattgcaaggagattgaccattgtaggtttatggtgcattcaaacatttccaaatgatagaccaacaatgagtagagtgattgaaatgt |
31230209 |
T |
|
| Q |
162 |
tggaaggtagcatgaatgtccttgaaataccaccaaaacctttggtttcttctcctactagatcattattggaatcttcaacttcttgaaattt |
255 |
Q |
| |
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| ||||| | || |||| | |||||||||||||||||| | |||||||||||||||||||| || ||||| ||| |||| |||||||| |
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| T |
31230210 |
tagaaggcaacaagaattgtttggaaataccaccaaaacctattctttcttctcctactagatcagtacaagaatcatcagcttcatgaaattt |
31230303 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 62 - 222
Target Start/End: Complemental strand, 31145261 - 31145101
Alignment:
| Q |
62 |
gaagaaaatgagattgcaaaaggaatgaccattgttggtttatggtgcattcaaacattgccaaatgatcgaccaacaatgagtagagtgattgaaatgt |
161 |
Q |
| |
|
|||||| |||||||||||| ||||||| ||||| ||||||||||||||||||||||| |||| |||| |||| |||||||||| ||| |||||||||| |
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| T |
31145261 |
gaagaagatgagattgcaaggagaatgactattgtgggtttatggtgcattcaaacatttccaagtgatagacctacaatgagtaaagttattgaaatgt |
31145162 |
T |
|
| Q |
162 |
tggaaggtagcatgaatgtccttgaaataccaccaaaacctttggtttcttctcctactag |
222 |
Q |
| |
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| |||| || ||||||| |||||||||||||| ||||| ||| |||||||||||||||| |
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|
| T |
31145161 |
tagaagttaacatgaattcacttgaaataccacccaaaccgttgctttcttctcctactag |
31145101 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 62 - 222
Target Start/End: Complemental strand, 31189319 - 31189159
Alignment:
| Q |
62 |
gaagaaaatgagattgcaaaaggaatgaccattgttggtttatggtgcattcaaacattgccaaatgatcgaccaacaatgagtagagtgattgaaatgt |
161 |
Q |
| |
|
|||||| | |||||||||| ||||||| ||||| ||||||||||||||||||||||| |||| |||| |||| |||||||||| |||||||||||||| |
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| T |
31189319 |
gaagaagacgagattgcaaggagaatgacaattgtgggtttatggtgcattcaaacatttccaagtgatagacctacaatgagtaaagtgattgaaatgt |
31189220 |
T |
|
| Q |
162 |
tggaaggtagcatgaatgtccttgaaataccaccaaaacctttggtttcttctcctactag |
222 |
Q |
| |
|
| |||| || ||||||| | |||||||||||||| ||||| | ||||||| |||||||| |
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| T |
31189219 |
tagaagttaacatgaatttacttgaaataccacctaaaccatatctttcttcacctactag |
31189159 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 84 - 222
Target Start/End: Complemental strand, 31201104 - 31200966
Alignment:
| Q |
84 |
gaatgaccattgttggtttatggtgcattcaaacattgccaaatgatcgaccaacaatgagtagagtgattgaaatgttggaaggtagcatgaatgtcct |
183 |
Q |
| |
|
||||||| ||||| ||||||||||||||||||||||| |||| |||| |||| |||||||||| ||||||||||||||| |||| || ||||||| | || |
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|
| T |
31201104 |
gaatgacaattgtgggtttatggtgcattcaaacatttccaagtgatagacctacaatgagtaaagtgattgaaatgttagaagttaacatgaatttact |
31201005 |
T |
|
| Q |
184 |
tgaaataccaccaaaacctttggtttcttctcctactag |
222 |
Q |
| |
|
|||||||||||| ||||| | ||||||| |||||||| |
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|
| T |
31201004 |
tgaaataccacctaaaccatatctttcttcacctactag |
31200966 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 62 - 230
Target Start/End: Original strand, 30961325 - 30961493
Alignment:
| Q |
62 |
gaagaaaatgagattgcaaaaggaatgaccattgttggtttatggtgcattcaaacattgccaaatgatcgaccaacaatgagtagagtgattgaaatgt |
161 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||| ||||| ||||| ||||||||||| || |||| | || |||||||||| ||| ||||||||| |
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|
| T |
30961325 |
gaagaaaatgagattgcaaagagaatgaccattgtgggtttgtggtgtattcaaacatttcctaatggcaggcctacaatgagtaaagtagttgaaatgt |
30961424 |
T |
|
| Q |
162 |
tggaaggtagcatgaatgtcctt-gaaataccaccaaaacctttggtttcttctcctactagatcattat |
230 |
Q |
| |
|
| |||| || ||||||| || || ||||||||||||||||| ||| |||| ||||||||||||||||||| |
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|
| T |
30961425 |
tagaagttaacatgaat-tcattggaaataccaccaaaaccattgctttcgtctcctactagatcattat |
30961493 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 62 - 226
Target Start/End: Complemental strand, 31171574 - 31171410
Alignment:
| Q |
62 |
gaagaaaatgagattgcaaaaggaatgaccattgttggtttatggtgcattcaaacattgccaaatgatcgaccaacaatgagtagagtgattgaaatgt |
161 |
Q |
| |
|
|||||| |||||||||||| ||||||| ||||| ||||||||||||||||||||||| |||| |||| |||| |||||||||| |||||||||||||| |
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|
| T |
31171574 |
gaagaagatgagattgcaaggagaatgactattgtgggtttatggtgcattcaaacatttccaagtgatagacctacaatgagtaaagtgattgaaatgt |
31171475 |
T |
|
| Q |
162 |
tggaaggtagcatgaatgtccttgaaataccaccaaaacctttggtttcttctcctactagatca |
226 |
Q |
| |
|
| |||| || |||||| || ||||| ||||||||||| || ||| ||||| ||||||||| |
|
|
| T |
31171474 |
tagaagttacaatgaattcactggaaatgccaccaaaaccattacattcatctcccactagatca |
31171410 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 62 - 225
Target Start/End: Original strand, 31224830 - 31224993
Alignment:
| Q |
62 |
gaagaaaatgagattgcaaaaggaatgaccattgttggtttatggtgcattcaaacattgccaaatgatcgaccaacaatgagtagagtgattgaaatgt |
161 |
Q |
| |
|
|||||| || ||||||||| ||||||||||||| ||||| ||||| |||||||| || || |||||| | || |||||||||| |||||||||||||| |
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|
| T |
31224830 |
gaagaagataagattgcaaggagaatgaccattgtaggtttgtggtgtattcaaacgtttcctaatgataggcctacaatgagtaaagtgattgaaatgt |
31224929 |
T |
|
| Q |
162 |
tggaaggtagcatgaatgtcctt-gaaataccaccaaaacctttggtttcttctcctactagatc |
225 |
Q |
| |
|
| || | |||||||||| || || ||||| ||||||||||| ||| |||||||||| |||||||| |
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|
| T |
31224930 |
tagatgttagcatgaat-tcgttggaaatgccaccaaaaccattgctttcttctccgactagatc |
31224993 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 62 - 226
Target Start/End: Original strand, 30992807 - 30992971
Alignment:
| Q |
62 |
gaagaaaatgagattgcaaaaggaatgaccattgttggtttatggtgcattcaaacattgccaaatgatcgaccaacaatgagtagagtgattgaaatgt |
161 |
Q |
| |
|
|||||| ||||||||||||| | ||||||||||| |||| ||||| ||||||||||| || |||| |||| |||||||||| ||| ||||||||| |
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|
| T |
30992807 |
gaagaagatgagattgcaaagaggatgaccattgtgagtttgtggtgtattcaaacatttcctaatggcagacctacaatgagtaaagtagttgaaatgt |
30992906 |
T |
|
| Q |
162 |
tggaaggtagcatgaatgtcctt-gaaataccaccaaaacctttggtttcttctcctactagatca |
226 |
Q |
| |
|
| |||| | ||| ||| || || ||||||||||||||||| ||| |||| ||||||||||||||| |
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|
| T |
30992907 |
tagaagttgacattaat-tcgttggaaataccaccaaaaccattgctttcgtctcctactagatca |
30992971 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 84 - 168
Target Start/End: Original strand, 31214580 - 31214664
Alignment:
| Q |
84 |
gaatgaccattgttggtttatggtgcattcaaacattgccaaatgatcgaccaacaatgagtagagtgattgaaatgttggaagg |
168 |
Q |
| |
|
|||||||||| || || |||||||||||||||||| | ||||||||| |||| ||||||||||||| ||||||||||| ||||| |
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|
| T |
31214580 |
gaatgaccatagtaggattatggtgcattcaaacacttccaaatgatagacctgcaatgagtagagttattgaaatgttagaagg |
31214664 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 362 - 407
Target Start/End: Original strand, 30955869 - 30955914
Alignment:
| Q |
362 |
gcaagtagattacatatatgtgattcaaataccaatgtgatctatg |
407 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30955869 |
gcaattagattacatatatgtgattcaaataccaatgtgatctatg |
30955914 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 95 - 175
Target Start/End: Original strand, 44036038 - 44036118
Alignment:
| Q |
95 |
gttggtttatggtgcattcaaacattgccaaatgatcgaccaacaatgagtagagtgattgaaatgttggaaggtagcatg |
175 |
Q |
| |
|
|||||||| ||||||||||||||| | || | | || |||| ||||| |||| ||||||||| |||||||| ||||||||| |
|
|
| T |
44036038 |
gttggtttgtggtgcattcaaacaattcctactcatagacctacaataagtaaagtgattgatatgttggatggtagcatg |
44036118 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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