View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16563_low_8 (Length: 325)
Name: NF16563_low_8
Description: NF16563
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16563_low_8 |
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Alignment Details
Target: chr8 (Bit Score: 259; Significance: 1e-144; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 17 - 312
Target Start/End: Original strand, 27771546 - 27771841
Alignment:
| Q |
17 |
aacttgaacattgtgtattgaagcattcgaagtgaatacgctagaacgacatagaggacaactagagttagatttaagccatgtatcaatacaaggaaga |
116 |
Q |
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| T |
27771546 |
aacttgaacatgatgtgttgaagcattcgaagtgaatacgctagaacgacatagaggacaactagagttagatttaagccatgtatcaatacaaggaaga |
27771645 |
T |
|
| Q |
117 |
tgaaaaacatggttacacattggtaaaagtctaacactttcatcatcttgaaactcacttagacaaactgaacaatctgtgacagtagtactnnnnnnng |
216 |
Q |
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| T |
27771646 |
tgaaaaacatggttacacattggtaaaagtctaacactttcatcatcttgaaactcacttagacaaactgaacaatctgtgacagtagtactaaaaaaag |
27771745 |
T |
|
| Q |
217 |
catctccttttttgtagctaaaaactgcaatggattttatttgagcatcatctaaaccaaaggttgaaacttgacaattttcgcggcgatattctt |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
27771746 |
catctccttttttgtagctaaaaactgcaatggattttatttgagcatcatctaaaccaaaggttgaaacttgacaattttcgcggcgattttctt |
27771841 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 91 - 196
Target Start/End: Original strand, 37504077 - 37504182
Alignment:
| Q |
91 |
taagccatgtatcaatacaaggaagatgaaaaacatggttacacattggtaaaagtctaacactttcatcatcttgaaactcacttagacaaactgaaca |
190 |
Q |
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| T |
37504077 |
taagccaagtatcaatacaagggatatgaaaagcgtggctacacttaggcaaaattctgagactctcttcctcttgaaattcacctagacaaacagaaca |
37504176 |
T |
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| Q |
191 |
atctgt |
196 |
Q |
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||||| |
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| T |
37504177 |
ctctgt |
37504182 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 71; Significance: 4e-32; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 62 - 196
Target Start/End: Original strand, 12617788 - 12617922
Alignment:
| Q |
62 |
acgacatagaggacaactagagttagatttaagccatgtatcaatacaaggaagatgaaaaacatggttacacattggtaaaagtctaacactttcatca |
161 |
Q |
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|||||| ||||||||| |||| | |||||| |||||||||||||||||||||||||||||| ||||| |||| | ||||||||||||| ||| ||||| |
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| T |
12617788 |
acgacaaagaggacaattagaatgagatttgagccatgtatcaatacaaggaagatgaaaagcatggctacatttaggtaaaagtctaatactctcatcg |
12617887 |
T |
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| Q |
162 |
tcttgaaactcacttagacaaactgaacaatctgt |
196 |
Q |
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| T |
12617888 |
tcttgaaactcgtttagacaaacagaacaatctgt |
12617922 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 91 - 195
Target Start/End: Original strand, 37227861 - 37227965
Alignment:
| Q |
91 |
taagccatgtatcaatacaaggaagatgaaaaacatggttacacattggtaaaagtctaacactttcatcatcttgaaactcacttagacaaactgaaca |
190 |
Q |
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||||||| |||||||||||||| | ||||||| ||||||||||| |||| |||||||||| | | ||||| |||| ||||||||| | |||||| ||||| |
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| T |
37227861 |
taagccaagtatcaatacaaggtaaatgaaaagcatggttacactttggcaaaagtctaagattctcatcttcttcaaactcactcaaacaaacagaaca |
37227960 |
T |
|
| Q |
191 |
atctg |
195 |
Q |
| |
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||||| |
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| T |
37227961 |
atctg |
37227965 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 91 - 175
Target Start/End: Complemental strand, 1867112 - 1867028
Alignment:
| Q |
91 |
taagccatgtatcaatacaaggaagatgaaaaacatggttacacattggtaaaagtctaacactttcatcatcttgaaactcact |
175 |
Q |
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||||||| |||||||||||| | | ||||||| |||| | |||| | ||||||||||||| | | ||||| |||| ||||||||| |
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| T |
1867112 |
taagccaagtatcaatacaaagtaaatgaaaagcatgatgacacttaggtaaaagtctaagattctcatcttcttcaaactcact |
1867028 |
T |
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