View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16564_high_1 (Length: 325)
Name: NF16564_high_1
Description: NF16564
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16564_high_1 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 275; Significance: 1e-154; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 13 - 307
Target Start/End: Original strand, 32190196 - 32190490
Alignment:
| Q |
13 |
aatatgttgctagctttgacatctctgtggaatattggaggatcagcttctgtgtgtagatagacaagacctttagctgaccctagagcaatcttcaatc |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32190196 |
aatatgttgctagctttgacatctctgtggaatattggaggatcagcttctgtgtgtagatagacaagacctttagctgaccctagagcaatcttcaatc |
32190295 |
T |
|
| Q |
113 |
tcatggcaaaactaagtggttctttagatttagctgtcataaaacattaactacaaagttataagagaaaacatagaaatccataatttttccatataat |
212 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
32190296 |
tcatggcaaaactaagcggttctttagatttagctgtcataaaacattaactacaaagttaaaagagaaaacatagaaatccataatttttctatataat |
32190395 |
T |
|
| Q |
213 |
caaatatcatgattattttgtacttcagttattttttaagatattgtagaagaggaaattattatttattaatgcgacactagtgattattttac |
307 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||| |
|
|
| T |
32190396 |
caaatatcatgattattttgtacttcagttattttttaagatattgtagaagaggaagttattatttattaatgtgacactagtgattattttac |
32190490 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 54; Significance: 5e-22; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 13 - 122
Target Start/End: Complemental strand, 28273807 - 28273698
Alignment:
| Q |
13 |
aatatgttgctagctttgacatctctgtggaatattggaggatcagcttctgtgtgtagatagacaagacctttagctgaccctagagcaatcttcaatc |
112 |
Q |
| |
|
||||||||||| | ||| ||||||| ||| |||||||||||||| ||||||||||||||||| | ||||||||||||||| ||| || |||||||||| |
|
|
| T |
28273807 |
aatatgttgctggatttaacatctcggtgaaatattggaggatcggcttctgtgtgtagatacatgagacctttagctgactctaatgctatcttcaatc |
28273708 |
T |
|
| Q |
113 |
tcatggcaaa |
122 |
Q |
| |
|
|||| ||||| |
|
|
| T |
28273707 |
tcatagcaaa |
28273698 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 13 - 117
Target Start/End: Complemental strand, 28288868 - 28288764
Alignment:
| Q |
13 |
aatatgttgctagctttgacatctctgtggaatattggaggatcagcttctgtgtgtagatagacaagacctttagctgaccctagagcaatcttcaatc |
112 |
Q |
| |
|
||||||||||| || |||||||| | ||||||||||||||||| ||||| |||| ||||| | ||||||||||| ||||||| ||||||||||||| |
|
|
| T |
28288868 |
aatatgttgctggccttgacatcacgatggaatattggaggatcggcttcattgtgcagatacatgagacctttagccgaccctaatgcaatcttcaatc |
28288769 |
T |
|
| Q |
113 |
tcatg |
117 |
Q |
| |
|
||||| |
|
|
| T |
28288768 |
tcatg |
28288764 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University