View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16564_high_4 (Length: 227)

Name: NF16564_high_4
Description: NF16564
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16564_high_4
NF16564_high_4
[»] chr2 (2 HSPs)
chr2 (1-227)||(14741952-14742177)
chr2 (3-227)||(14734977-14735200)
[»] chr5 (1 HSPs)
chr5 (17-227)||(29467226-29467433)


Alignment Details
Target: chr2 (Bit Score: 211; Significance: 1e-116; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 14742177 - 14741952
Alignment:
Q  1 ctcataagcaaatgagtaaaaagcttgctctagaagccacttatgcaaacaagactagagaattaagtactgaggttggttcatcatttttattttgcaa 100  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14742177 ctcataagcaaatgagtaataagcttgctctagaagccacttatgcaaacaagactagagaattaagtactgaggttggttcatcatttttattttgcaa 14742078  T
Q  101 agttgtgtttaaatttaatatttgtatggttatcataagaaatatatcagaagattaacttatgcatttaatttttgttgcttcagctgtccaatgttga 200  Q
    ||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14742077 agttgtgttcaaatttaata-ttgtatggttatcataagaaatatatcagaagattaacttatgcatttaatttttgttgcttcagctgtccaatgttga 14741979  T
Q  201 gacggctttgagaagtctcaaaacaac 227  Q
    |||||||||||||||||||||||||||    
T  14741978 gacggctttgagaagtctcaaaacaac 14741952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 3 - 227
Target Start/End: Complemental strand, 14735200 - 14734977
Alignment:
Q  3 cataagcaaatgagtaaaaagcttgctctagaagccacttatgcaaacaagactagagaattaagtactgaggttggttcatcatttttattttgcaaag 102  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||    
T  14735200 cataagcaattgagtaaaaagcttgctctagaagccacttatgcaaacaagactagagaattaagtactgaggttggttcatcatttttgttttgcagag 14735101  T
Q  103 ttgtgtttaaatttaatatttgtatggttatcataagaaatatatcagaagattaacttatgcatttaatttttgttgcttcagctgtccaatgttgaga 202  Q
    |||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |  |||||||  |||| |    
T  14735100 ttgtgtttaaattttata-ttgtatggttatcataagaaatatatcagaagattaacttatgcatttaatttttgttgctctacttgtccaagattgata 14735002  T
Q  203 cggctttgagaagtctcaaaacaac 227  Q
    |||||||||||||||||||||||||    
T  14735001 cggctttgagaagtctcaaaacaac 14734977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 17 - 227
Target Start/End: Original strand, 29467226 - 29467433
Alignment:
Q  17 taaaaagcttgctctagaagccacttatgcaaacaagactagagaattaagtactgaggttggttcatcatttttattttgcaaagttgtgttt-aaatt 115  Q
    ||||| |||||||| |||||| |||||||| || | |||||| |||||||| |||||||||||||||| ||||   |||| || || ||||||| ||||     
T  29467226 taaaaggcttgctcaagaagcaacttatgccaatatgactagggaattaagcactgaggttggttcattattt---tttttcagagctgtgtttaaaatc 29467322  T
Q  116 taatatttgtatggttatcataagaaatatatcagaagattaacttatgcatttaatttttgttgcttcagctgtccaatgttgagacggctttgagaag 215  Q
    ||||   |||||| |  |   ||||| ||| ||||| | |||| || ||||||||| |||||||| | |||||||| || ||||| | ||||||||||||    
T  29467323 taat-gatgtatgttacttggaagaagtatttcagacggttaatttgtgcatttaacttttgttgttccagctgtctaaggttgatatggctttgagaag 29467421  T
Q  216 tctcaaaacaac 227  Q
    ||||||||||||    
T  29467422 tctcaaaacaac 29467433  T

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