View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16564_low_1 (Length: 624)

Name: NF16564_low_1
Description: NF16564
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16564_low_1
NF16564_low_1
[»] chr1 (6 HSPs)
chr1 (167-606)||(4411655-4412094)
chr1 (1-175)||(4411248-4411425)
chr1 (51-122)||(4327574-4327645)
chr1 (35-127)||(48635169-48635260)
chr1 (33-108)||(42423183-42423258)
chr1 (27-85)||(441649-441707)
[»] chr8 (3 HSPs)
chr8 (40-108)||(35775218-35775286)
chr8 (33-124)||(8252812-8252903)
chr8 (36-108)||(7624591-7624663)
[»] chr2 (6 HSPs)
chr2 (27-136)||(4908798-4908907)
chr2 (33-127)||(4119404-4119498)
chr2 (33-127)||(11510968-11511061)
chr2 (29-87)||(6989789-6989847)
chr2 (50-140)||(28206708-28206798)
chr2 (33-74)||(6767689-6767730)
[»] chr4 (5 HSPs)
chr4 (33-77)||(51093272-51093316)
chr4 (35-86)||(19067434-19067485)
chr4 (36-102)||(22887822-22887888)
chr4 (36-102)||(22939486-22939552)
chr4 (33-127)||(41058935-41059029)
[»] chr7 (1 HSPs)
chr7 (33-127)||(21435975-21436070)
[»] chr3 (9 HSPs)
chr3 (35-126)||(35951047-35951138)
chr3 (49-124)||(40339257-40339331)
chr3 (27-125)||(30958044-30958142)
chr3 (27-125)||(30973856-30973954)
chr3 (37-127)||(51667153-51667243)
chr3 (45-85)||(42534464-42534504)
chr3 (58-105)||(44375518-44375564)
chr3 (35-76)||(23187691-23187732)
chr3 (33-85)||(4194008-4194060)
[»] chr6 (3 HSPs)
chr6 (56-124)||(26492568-26492636)
chr6 (49-140)||(25208656-25208747)
chr6 (45-78)||(7263099-7263132)
[»] chr5 (3 HSPs)
chr5 (33-87)||(10859855-10859909)
chr5 (33-85)||(10860373-10860425)
chr5 (33-77)||(18977376-18977420)


Alignment Details
Target: chr1 (Bit Score: 428; Significance: 0; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 428; E-Value: 0
Query Start/End: Original strand, 167 - 606
Target Start/End: Original strand, 4411655 - 4412094
Alignment:
Q  167 aagttttgttcgagaatgctgatagtagtttttattttactcaggtggacagtcaatatagtcaatgtttggatgagattcacactgtcgtatctgcatt 266  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4411655 aagttttgttcgagaatgctgatagtagtctttattttactcaggtggacagtcaatatagtcaatgtttggatgagattcacactgtcgtatctgcatt 4411754  T
Q  267 tcatgctgctactgagctcgatccacaaatacatgcgcactttgctgtcaaaacggtttctcaactatataaggacttgagagagaggattagcaaacat 366  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  4411755 tcatgctgctactgagctcgatccacaaatacacgcgcactttgctgtcaaaacggtttctcgactatataaggacttgagagagaggattagcaaacat 4411854  T
Q  367 attctttccatgggatcaaattttaacagttcatggtcagaagaggataaggaattatctgttgaaacttcattcattcaaaagcaatgggctcttcaac 466  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4411855 attctttccatgggatcaaattttaacagttcatggtcagaagaggataaggaattatctgttgaaacttcattcattcaaaagcaatgggctcttcaac 4411954  T
Q  467 agttgaaaaggaaagatcagttatggaggccccaaaggggcttgccagaaagatctgtttccgttctacgtgattggatgtttcagaatttcctccatcc 566  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4411955 agttgaaaaggaaagatcagttatggaggccccaaaggggcttgccagaaagatctgtttccgttctacgtgattggatgtttcagaatttcctccatcc 4412054  T
Q  567 gtaagtattatctataatcaaacatatgctgccacattgc 606  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  4412055 gtaagtattatctataatcaaacatatgctgccacattgc 4412094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 1 - 175
Target Start/End: Original strand, 4411248 - 4411425
Alignment:
Q  1 tttggatgttttctagtagagttggtacttagagctagaattttgagcttttgcctctacaattgatttttagccttgaatttattgctcaatcaacttt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4411248 tttggatgttttctagtagagttggtacttagagctagaattttgagcttttgcctctacaattgatttttagccttgaatttattgctcaatcaacttt 4411347  T
Q  101 tacat--gaatctatcgaaacat-aaatcaaattacatgcaacaccctcttaggaagaaaatcaaaattaagttttgt 175  Q
    |||||  |||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||| ||||||    
T  4411348 tacatgagaatctatcgaaacataaaatcaaattacatgcaacaccctcttaggcagaaaatcaaaattaatttttgt 4411425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 51 - 122
Target Start/End: Complemental strand, 4327645 - 4327574
Alignment:
Q  51 ttgcctctacaattgatttttagccttgaatttattgctcaatcaacttttacatgaatctatcgaaacata 122  Q
    |||||||||||||||||||||| |||||||||||||| |||| | ||| |||||||||| |||  |||||||    
T  4327645 ttgcctctacaattgatttttatccttgaatttattgttcaagccactattacatgaatatattcaaacata 4327574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 35 - 127
Target Start/End: Complemental strand, 48635260 - 48635169
Alignment:
Q  35 ctagaattttgagcttttgcctctacaattgatttttagccttgaatttattgctcaatcaacttttacatgaatctatcgaaacataaatca 127  Q
    |||||||||  |||||||| ||||| |||||||||||| | |||||||||| | | || | || ||||||||||| |||| ||||||||||||    
T  48635260 ctagaatttgaagcttttgtctctataattgatttttaccattgaatttatcgttaaacccac-tttacatgaatgtatccaaacataaatca 48635169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 33 - 108
Target Start/End: Complemental strand, 42423258 - 42423183
Alignment:
Q  33 agctagaattttgagcttttgcctctacaattgatttttagccttgaatttattgctcaatcaacttttacatgaa 108  Q
    ||||||||||| ||||||||| ||||| |||||| ||||||| |  ||||||||| |||| | |||||||| ||||    
T  42423258 agctagaatttagagcttttgtctctaaaattgaattttagcttcaaatttattggtcaacccacttttacgtgaa 42423183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 27 - 85
Target Start/End: Complemental strand, 441707 - 441649
Alignment:
Q  27 acttagagctagaattttgagcttttgcctctacaattgatttttagccttgaatttat 85  Q
    ||||| |||||||||||  || ||| || |||||||||||||||||| |||||||||||    
T  441707 acttaaagctagaatttatagttttggcttctacaattgatttttagacttgaatttat 441649  T

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Target: chr8 (Bit Score: 49; Significance: 1e-18; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 40 - 108
Target Start/End: Original strand, 35775218 - 35775286
Alignment:
Q  40 attttgagcttttgcctctacaattgatttttagccttgaatttattgctcaatcaacttttacatgaa 108  Q
    |||| ||||||||| |||||||||||||||||||||||||||| |||| |||||| |||||||||||||    
T  35775218 atttggagcttttgtctctacaattgatttttagccttgaattcattgttcaatccacttttacatgaa 35775286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 33 - 124
Target Start/End: Original strand, 8252812 - 8252903
Alignment:
Q  33 agctagaattttgagcttttgcctctacaattgatttttagccttgaatttattgctcaatcaacttttacatgaatctatcgaaacataaa 124  Q
    ||||| ||||| |||| ||||||||| || ||||| ||| |||||||||||| || |||| | ||||||||||| || |||| |||||||||    
T  8252812 agctacaatttggagcgtttgcctcttcatttgatgttttgccttgaatttactgttcaacccacttttacatgcatgtatctaaacataaa 8252903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 36 - 108
Target Start/End: Complemental strand, 7624663 - 7624591
Alignment:
Q  36 tagaattttgagcttttgcctctacaattgatttttagccttgaatttattgctcaatcaacttttacatgaa 108  Q
    ||||| || ||||||||| |||||||||||| |||| |||||||| |||||| |||||  |||||||| ||||    
T  7624663 tagaagttggagcttttggctctacaattgacttttggccttgaaattattgttcaatttacttttacttgaa 7624591  T

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Target: chr2 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 27 - 136
Target Start/End: Original strand, 4908798 - 4908907
Alignment:
Q  27 acttagagctagaattttgagcttttgcctctacaattgatttttagccttgaatttattgctcaatcaacttttacatgaatctatcgaaacataaatc 126  Q
    ||||| ||||| |||||  || ||| || ||||||||||||||| |||||| | ||||||| |||||| ||||| |||||||| |||| |||||||||||    
T  4908798 acttaaagctaaaatttgtagatttggcttctacaattgattttcagccttaactttattgttcaatccactttaacatgaatgtatccaaacataaatc 4908897  T
Q  127 aaattacatg 136  Q
    |  |||||||    
T  4908898 actttacatg 4908907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 33 - 127
Target Start/End: Complemental strand, 4119498 - 4119404
Alignment:
Q  33 agctagaattttgagcttttgcctctacaattgatttttagccttgaatttattgctcaatcaacttttacatgaatctatcgaaacataaatca 127  Q
    |||||||||||  |||||||||| ||| |||||| |||||||| ||||| ||||| |||||  ||  |||||||||| |||  ||||||||||||    
T  4119498 agctagaatttgaagcttttgccgctataattgacttttagccatgaatgtattgatcaattcacgcttacatgaatgtattcaaacataaatca 4119404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 33 - 127
Target Start/End: Original strand, 11510968 - 11511061
Alignment:
Q  33 agctagaattttgagcttttgcctctacaattgatttttagccttgaatttattgctcaatcaacttttacatgaatctatcgaaacataaatca 127  Q
    ||||||||||| ||| |||||||||||||||| | ||||| |||  ||||||||| |||| | ||||||| |||||| || | ||||||||||||    
T  11510968 agctagaatttggagtttttgcctctacaattta-ttttaacctcaaatttattgttcaacccacttttatatgaatgtagctaaacataaatca 11511061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 29 - 87
Target Start/End: Complemental strand, 6989847 - 6989789
Alignment:
Q  29 ttagagctagaattttgagcttttgcctctacaattgatttttagccttgaatttattg 87  Q
    ||||||||||||||| | | ||||| |||||||||||||||| |  |||||||||||||    
T  6989847 ttagagctagaatttagtgtttttgactctacaattgattttcaatcttgaatttattg 6989789  T

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Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 50 - 140
Target Start/End: Original strand, 28206708 - 28206798
Alignment:
Q  50 tttgcctctacaattgatttttagccttgaatttattgctcaatcaacttttacatgaatctatcgaaacataaatcaaattacatgcaac 140  Q
    ||||||| ||| |||||||||||| ||  ||||||||  ||||  ||||||||||||||| || | |||||||||| || |||||| ||||    
T  28206708 tttgcctataccattgatttttagtctcaaatttattattcaacaaacttttacatgaatgtacctaaacataaattaatttacattcaac 28206798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 33 - 74
Target Start/End: Original strand, 6767689 - 6767730
Alignment:
Q  33 agctagaattttgagcttttgcctctacaattgatttttagc 74  Q
    ||||||||||| |||||||||| ||||||||||| |||||||    
T  6767689 agctagaatttggagcttttgcttctacaattgaattttagc 6767730  T

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Target: chr4 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 33 - 77
Target Start/End: Original strand, 51093272 - 51093316
Alignment:
Q  33 agctagaattttgagcttttgcctctacaattgatttttagcctt 77  Q
    ||||||||||| |||||||||||||||||||||||||||||||||    
T  51093272 agctagaatttggagcttttgcctctacaattgatttttagcctt 51093316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 35 - 86
Target Start/End: Original strand, 19067434 - 19067485
Alignment:
Q  35 ctagaattttgagcttttgcctctacaattgatttttagccttgaatttatt 86  Q
    |||||||||  |||||||| |||||||||||||| ||||||| |||||||||    
T  19067434 ctagaatttgaagcttttgtctctacaattgattattagcctcgaatttatt 19067485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 36 - 102
Target Start/End: Complemental strand, 22887888 - 22887822
Alignment:
Q  36 tagaattttgagcttttgcctctacaattgatttttagccttgaatttattgctcaatcaactttta 102  Q
    |||||||| |||||||| |||||| ||||| ||||||  ||||||||||||| ||||  ||||||||    
T  22887888 tagaatttagagcttttccctctaaaattggtttttactcttgaatttattgttcaaataactttta 22887822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 36 - 102
Target Start/End: Complemental strand, 22939552 - 22939486
Alignment:
Q  36 tagaattttgagcttttgcctctacaattgatttttagccttgaatttattgctcaatcaactttta 102  Q
    |||||||| |||||||| |||||| ||||| ||||||  ||||||||||||| ||||  ||||||||    
T  22939552 tagaatttagagcttttccctctaaaattggtttttactcttgaatttattgttcaaataactttta 22939486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 33 - 127
Target Start/End: Original strand, 41058935 - 41059029
Alignment:
Q  33 agctagaattttgagcttttgcctctacaattgatttttagccttgaatttattgctcaatcaacttttacatgaatctatcgaaacataaatca 127  Q
    ||||| ||||| ||| |||||||||||||||||| ||||| | || |||| |||| |||| | ||||||| || ||| ||||  |||||||||||    
T  41058935 agctaaaatttcgagtttttgcctctacaattgacttttaactttaaattgattgttcaacccacttttatataaatgtatctgaacataaatca 41059029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 33 - 127
Target Start/End: Complemental strand, 21436070 - 21435975
Alignment:
Q  33 agctagaattttg-agcttttgcctctacaattgatttttagccttgaatttattgctcaatcaacttttacatgaatctatcgaaacataaatca 127  Q
    ||||||||||||| ||||||||||||||| ||||| ||||||  ||||| |||||| |||||| |||||| ||||||   ||| ||||||||||||    
T  21436070 agctagaattttggagcttttgcctctaccattgaattttaggtttgaagttattgttcaatccacttttccatgaaggcatccaaacataaatca 21435975  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000006; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 35 - 126
Target Start/End: Original strand, 35951047 - 35951138
Alignment:
Q  35 ctagaattttgagcttttgcctctacaattgatttttagccttgaatttattgctcaatcaacttttacatgaatctatcgaaacataaatc 126  Q
    ||||||||||| ||||||||| |||||||||| |||| || |||||||| ||| |||| | ||| ||| | |||| |||| |||||||||||    
T  35951047 ctagaattttgcgcttttgcccctacaattgagttttggcattgaattttttgttcaagccactattatacgaatgtatctaaacataaatc 35951138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 49 - 124
Target Start/End: Original strand, 40339257 - 40339331
Alignment:
Q  49 ttttgcctctacaattgatttttagccttgaatttattgctcaatcaacttttacatgaatctatcgaaacataaa 124  Q
    |||||| ||||||||||||||| |||||||||||||||| |||||  |||||||| | ||| |||| |||||||||    
T  40339257 ttttgcttctacaattgatttt-agccttgaatttattgttcaattcacttttacctaaatatatccaaacataaa 40339331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 27 - 125
Target Start/End: Original strand, 30958044 - 30958142
Alignment:
Q  27 acttagagctagaattttgagcttttgcctctacaattgatttttagccttgaatttattgctcaatcaacttttacatgaatctatcgaaacataaat 125  Q
    ||||| |||| | |||| |||||||||  ||||||| ||| ||||| |||| || |||||| |||||  |||||||||||||| |||| ||||||||||    
T  30958044 acttaaagctgggatttagagcttttgtttctacaagtgacttttaacctttaaattattgttcaattcacttttacatgaatatatccaaacataaat 30958142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 27 - 125
Target Start/End: Original strand, 30973856 - 30973954
Alignment:
Q  27 acttagagctagaattttgagcttttgcctctacaattgatttttagccttgaatttattgctcaatcaacttttacatgaatctatcgaaacataaat 125  Q
    ||||| |||| | |||| |||||||||  ||||||| ||| ||||| |||| || |||||| |||||  |||||||||||||| |||| ||||||||||    
T  30973856 acttaaagctgggatttagagcttttgtttctacaagtgacttttaacctttaaattattgttcaattcacttttacatgaatatatccaaacataaat 30973954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 37 - 127
Target Start/End: Original strand, 51667153 - 51667243
Alignment:
Q  37 agaattttgagcttttgcctctacaattgatttttagccttgaatttattgctcaatcaacttttacatgaatctatcgaaacataaatca 127  Q
    ||||||| ||| ||||||  |||  |||||| || |||||||||||||||| ||||   ||||||||||||||||| | ||||||||||||    
T  51667153 agaatttggagtttttgcaactatgattgatattcagccttgaatttattgttcaacgcacttttacatgaatctacccaaacataaatca 51667243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 45 - 85
Target Start/End: Original strand, 42534464 - 42534504
Alignment:
Q  45 gagcttttgcctctacaattgatttttagccttgaatttat 85  Q
    ||||||||||||||||||||| ||||||||||| |||||||    
T  42534464 gagcttttgcctctacaattgttttttagccttaaatttat 42534504  T

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Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 58 - 105
Target Start/End: Complemental strand, 44375564 - 44375518
Alignment:
Q  58 tacaattgatttttagccttgaatttattgctcaatcaacttttacat 105  Q
    |||||||||||||||||||| ||||||||| |||||| ||||||||||    
T  44375564 tacaattgatttttagccttaaatttattgttcaatc-acttttacat 44375518  T

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Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 35 - 76
Target Start/End: Original strand, 23187691 - 23187732
Alignment:
Q  35 ctagaattttgagcttttgcctctacaattgatttttagcct 76  Q
    |||||||||| || |||| |||||||||||||||||||||||    
T  23187691 ctagaattttaaggttttacctctacaattgatttttagcct 23187732  T

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Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 33 - 85
Target Start/End: Complemental strand, 4194060 - 4194008
Alignment:
Q  33 agctagaattttgagcttttgcctctacaattgatttttagccttgaatttat 85  Q
    |||||||||||  ||  |||||||||||||||||||||||||||  |||||||    
T  4194060 agctagaatttgaagtgtttgcctctacaattgatttttagcctctaatttat 4194008  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000004; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 56 - 124
Target Start/End: Original strand, 26492568 - 26492636
Alignment:
Q  56 tctacaattgatttttagccttgaatttattgctcaatcaacttttacatgaatctatcgaaacataaa 124  Q
    ||||||||||||||||||||| |||| ||||| |||||| || | ||||| ||| |||| |||||||||    
T  26492568 tctacaattgatttttagcctcgaatatattgttcaatccacgtatacataaatatatccaaacataaa 26492636  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 49 - 140
Target Start/End: Original strand, 25208656 - 25208747
Alignment:
Q  49 ttttgcctctacaattgatttttagccttgaatttattgctcaatcaacttttacatgaatctatcgaaacataaatcaaattacatgcaac 140  Q
    ||||| ||||||| |||||| |||| || |||| |||   | |||| |||||||||| |||||||||||||||||||||  |||||| ||||    
T  25208656 ttttgtctctacagttgattattagactcgaatatatcatttaatccacttttacataaatctatcgaaacataaatcattttacattcaac 25208747  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 45 - 78
Target Start/End: Original strand, 7263099 - 7263132
Alignment:
Q  45 gagcttttgcctctacaattgatttttagccttg 78  Q
    |||||||||| |||||||||||||||||||||||    
T  7263099 gagcttttgcttctacaattgatttttagccttg 7263132  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000006; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 33 - 87
Target Start/End: Complemental strand, 10859909 - 10859855
Alignment:
Q  33 agctagaattttgagcttttgcctctacaattgatttttagccttgaatttattg 87  Q
    ||||||||||| ||||||||||||| ||| |||||||||| |||  |||||||||    
T  10859909 agctagaatttggagcttttgcctcaacatttgatttttaacctcaaatttattg 10859855  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 33 - 85
Target Start/End: Complemental strand, 10860425 - 10860373
Alignment:
Q  33 agctagaattttgagcttttgcctctacaattgatttttagccttgaatttat 85  Q
    |||||||||||  |||||||||||||| | |||||||||||| ||| ||||||    
T  10860425 agctagaatttgtagcttttgcctctagagttgatttttagctttggatttat 10860373  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 33 - 77
Target Start/End: Complemental strand, 18977420 - 18977376
Alignment:
Q  33 agctagaattttgagcttttgcctctacaattgatttttagcctt 77  Q
    ||||||||||| ||| |||||  ||||||||||||||||||||||    
T  18977420 agctagaatttagagtttttgtttctacaattgatttttagcctt 18977376  T

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