View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16564_low_3 (Length: 293)
Name: NF16564_low_3
Description: NF16564
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16564_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 145; Significance: 2e-76; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 1 - 162
Target Start/End: Original strand, 45479660 - 45479825
Alignment:
| Q |
1 |
aaattgttttttagtttggtttgggtgataattaaaattattaagcaataaaatatagactttttggagtacaattttgtgctcgacaaataattatata |
100 |
Q |
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| T |
45479660 |
aaattgttttttagtttggtttgggtgataattaaaattattaagcaataaaatatagactttttggagtacaattttgtgctcgacaaataattatata |
45479759 |
T |
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| Q |
101 |
tga----ttttttctatttaagaaaagctatccgtaaatgaattaattatagttgtttgcaaactt |
162 |
Q |
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| T |
45479760 |
tgattttttttttttatttaagaaaagctatccgtaaatgaattaattatagttgtttgcaaactt |
45479825 |
T |
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Target: chr4; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 200 - 293
Target Start/End: Original strand, 45479845 - 45479938
Alignment:
| Q |
200 |
catataatgcaggaagaggcagcaagattgatccgcaatttggcaagttcagggtccaaagcagtaaacttaggacaaatgttgaatgtatgca |
293 |
Q |
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| T |
45479845 |
catataatgcaggaagaggtagcaagattgatccgcaatttggcaagttcagggtccaaagcagtaaacttaggacaaatgttgaatgtatgca |
45479938 |
T |
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