View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16564_low_4 (Length: 283)
Name: NF16564_low_4
Description: NF16564
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16564_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 134; Significance: 8e-70; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 134; E-Value: 8e-70
Query Start/End: Original strand, 131 - 276
Target Start/End: Complemental strand, 31524578 - 31524433
Alignment:
| Q |
131 |
aagtggaacaattgtagaagttgttgttttgtaagagttgttgacatcatttgaattgaaagaagcattttggcctttggcatttcgaattaagatgcgt |
230 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
31524578 |
aagtggaacaattgtagaagttgttgttttgtaagagttgttgatatcatttgaattgaaagaagcattttggcctttggcattttgaattaagatgcgt |
31524479 |
T |
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| Q |
231 |
tgtttggttctgttcttgcaatacaaatgattaaacatgtgtgcct |
276 |
Q |
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| T |
31524478 |
cgtttggttctgttcttgcaatacaaatgattaaacatgtgtgcct |
31524433 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 134; Significance: 8e-70; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 134; E-Value: 8e-70
Query Start/End: Original strand, 131 - 276
Target Start/End: Original strand, 33366922 - 33367067
Alignment:
| Q |
131 |
aagtggaacaattgtagaagttgttgttttgtaagagttgttgacatcatttgaattgaaagaagcattttggcctttggcatttcgaattaagatgcgt |
230 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
33366922 |
aagtggaacaattgtagaagttgttgttttgtaagagttgttgatatcatttgaattgaaagaagcattttggcctttggcattttgaattaagatgcgt |
33367021 |
T |
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| Q |
231 |
tgtttggttctgttcttgcaatacaaatgattaaacatgtgtgcct |
276 |
Q |
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| T |
33367022 |
cgtttggttctgttcttgcaatacaaatgattaaacatgtgtgcct |
33367067 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 134; Significance: 8e-70; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 134; E-Value: 8e-70
Query Start/End: Original strand, 131 - 276
Target Start/End: Complemental strand, 49194536 - 49194391
Alignment:
| Q |
131 |
aagtggaacaattgtagaagttgttgttttgtaagagttgttgacatcatttgaattgaaagaagcattttggcctttggcatttcgaattaagatgcgt |
230 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
49194536 |
aagtggaacaattgtagaagttgttgttttgtaagagttgttgatatcatttgaattgaaagaagcattttggcctttggcattttgaattaagatgcgt |
49194437 |
T |
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| Q |
231 |
tgtttggttctgttcttgcaatacaaatgattaaacatgtgtgcct |
276 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49194436 |
cgtttggttctgttcttgcaatacaaatgattaaacatgtgtgcct |
49194391 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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