View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16565_high_11 (Length: 295)
Name: NF16565_high_11
Description: NF16565
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16565_high_11 |
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Alignment Details
Target: chr3 (Bit Score: 251; Significance: 1e-139; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 17 - 279
Target Start/End: Complemental strand, 53319056 - 53318794
Alignment:
| Q |
17 |
tttggatgatcattgagtatgtgtatatttgttgaacacgtgaaaatggcactcattggaaagaacaaagtttggttttgtggatgaatctttcccaact |
116 |
Q |
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| T |
53319056 |
tttggatgattattgagtatgtgtatatttgttgaacacgtgaagatggcactcattggaaagaacaaagtttggttttgtggatgaatctttcccaact |
53318957 |
T |
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| Q |
117 |
ctggtggaggatgaacctctttggcgtgttatttattctacgtcgattagtcattcgaaattcattgttgattcgttgaacattaacagatagcatatct |
216 |
Q |
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| T |
53318956 |
ctggtggaggatgaacctctttggcgtgttatttattctacgtcgattagtcattcgaaattcattgttgattcgttgaacattaacagatagcatatct |
53318857 |
T |
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| Q |
217 |
tattttatccccaaccttgatgtaagcaatcacagataacaatagcaatacaaataaaataaa |
279 |
Q |
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| T |
53318856 |
tattttatccccaaccttgatgtaagcaatcacagatgacaatagcaatacaaataaaataaa |
53318794 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 226 - 279
Target Start/End: Complemental strand, 53413336 - 53413283
Alignment:
| Q |
226 |
cccaaccttgatgtaagcaatcacagataacaatagcaatacaaataaaataaa |
279 |
Q |
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| T |
53413336 |
cccacccttgatgtaagcaatcacagataacaataacaatacaagtaaaataaa |
53413283 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 239 - 279
Target Start/End: Original strand, 53365512 - 53365552
Alignment:
| Q |
239 |
taagcaatcacagataacaatagcaatacaaataaaataaa |
279 |
Q |
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| T |
53365512 |
taagcaatcacagataacaataacaatacaagtaaaataaa |
53365552 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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