View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16565_high_13 (Length: 266)
Name: NF16565_high_13
Description: NF16565
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16565_high_13 |
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Alignment Details
Target: chr3 (Bit Score: 149; Significance: 9e-79; HSPs: 10)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 149; E-Value: 9e-79
Query Start/End: Original strand, 15 - 176
Target Start/End: Original strand, 53319434 - 53319597
Alignment:
| Q |
15 |
tatatttaccattactccatgtaatggatccaaacaaatcttccttcattgaggttaaagtg--gaggagaaaataatttggtagctcagtgttttgcta |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||| |
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| T |
53319434 |
tatatttaccattactccatgtaatggatccaaacaaatcttccttcattgaggttaaagtgtggaggagaaaataatttggtagcttagtgttttgcta |
53319533 |
T |
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| Q |
113 |
ttttctgtaaattgaagtttatctggaatcaagtcgactttcaccccgttgggagcatcaataa |
176 |
Q |
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| T |
53319534 |
ttttctgtaaattgaagtttatctggaatcaagtcgactttcaccccgttgggagcatcaataa |
53319597 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 15 - 173
Target Start/End: Original strand, 53422525 - 53422683
Alignment:
| Q |
15 |
tatatttaccattactccatgtaatggatccaaacaaatcttccttcattgaggttaaagtggaggagaaaataatttggtagctcagtgttttgctatt |
114 |
Q |
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| T |
53422525 |
tatatttatcatttctccatgtaatggatccaaagagatcatcgttcagcgggattaaagtgtaggagaaaataacttggtagcttatttttttgctact |
53422624 |
T |
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| Q |
115 |
ttctgtaaattgaagtttatctggaatcaagtcgactttcaccccgttgggagcatcaa |
173 |
Q |
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| T |
53422625 |
ttttgtaaattggagtttctctggaatcaattggactttcaccccactaggagcatcaa |
53422683 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 180 - 266
Target Start/End: Original strand, 53430725 - 53430811
Alignment:
| Q |
180 |
tgaagttggagattgctatggaagggtagttgatgttggaaataagatcacgagtcgaatccttggggcagctgaaactatcaggga |
266 |
Q |
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| T |
53430725 |
tgaagttggagattgctatggaagggtaattaatattggaaatatgatcacgagtcgaatccttagggcagttgaaattatcaggga |
53430811 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 181 - 266
Target Start/End: Original strand, 26095113 - 26095198
Alignment:
| Q |
181 |
gaagttggagattgctatggaagggtagttgatgttggaaataagatcacgagtcgaatccttggggcagctgaaactatcaggga |
266 |
Q |
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| T |
26095113 |
gaagttagagattgcgatggaagggtaattgatattggaaatatgatcacgcgtcgaatccttagggcagttgaaactatcaggga |
26095198 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 180 - 265
Target Start/End: Original strand, 53307565 - 53307650
Alignment:
| Q |
180 |
tgaagttggagattgctatggaagggtagttgatgttggaaataagatcacgagtcgaatccttggggcagctgaaactatcaggg |
265 |
Q |
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| T |
53307565 |
tgaagttggagattgctatggaagggtagttgatgttcgagacatgatcaatagttgaatccttggggcagttgaaactatcaggg |
53307650 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 15 - 173
Target Start/End: Original strand, 53430491 - 53430646
Alignment:
| Q |
15 |
tatatttaccattactccatgtaatggatccaaacaaatcttccttcattgaggttaaagtggaggagaaaataatttggtagctcagtgttttgctatt |
114 |
Q |
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|||||||| |||| |||||||||||||||||||| | ||||||||| | ||||||||| ||||| ||| ||| ||||||||| | | | |||||| | |
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| T |
53430491 |
tatatttatcatttctccatgtaatggatccaaatagatcttcctttagcgaggttaaattggagaaga---taacttggtagcttattctattgctact |
53430587 |
T |
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| Q |
115 |
ttctgtaaattgaagtttatctggaatcaagtcgactttcaccccgttgggagcatcaa |
173 |
Q |
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|| ||||||||| ||||| ||||||||||| | |||||||||||| | |||||||||| |
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| T |
53430588 |
ttttgtaaattggagtttctctggaatcaattggactttcaccccactaggagcatcaa |
53430646 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 180 - 266
Target Start/End: Original strand, 53422762 - 53422848
Alignment:
| Q |
180 |
tgaagttggagattgctatggaagggtagttgatgttggaaataagatcacgagtcgaatccttggggcagctgaaactatcaggga |
266 |
Q |
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||||||||||||||||||| ||||| |||||||| ||||||||| ||||| |||| |||||||| ||||| ||||||||| |||||| |
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| T |
53422762 |
tgaagttggagattgctattgaaggatagttgatattggaaatatgatcaggagttgaatccttagggcaactgaaactaccaggga |
53422848 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 15 - 99
Target Start/End: Complemental strand, 48375328 - 48375244
Alignment:
| Q |
15 |
tatatttaccattactccatgtaatggatccaaacaaatcttccttcattgaggttaaagtggaggagaaaataatttggtagct |
99 |
Q |
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| T |
48375328 |
tatatttaccgttactccatgtaatggatccaaacagatcttccttcaacgaggttaaagtagtagagaaaatagcttggtagct |
48375244 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 180 - 266
Target Start/End: Complemental strand, 48375091 - 48375005
Alignment:
| Q |
180 |
tgaagttggagattgctatggaagggtagttgatgttggaaataagatcacgagtcgaatccttggggcagctgaaactatcaggga |
266 |
Q |
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|||||||||| |||||||||||||| || ||||| ||||||||| ||||| |||| || |||||||||||| ||||| ||||||||| |
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| T |
48375091 |
tgaagttggaaattgctatggaaggataattgatattggaaatatgatcaggagttgattccttggggcagttgaaagtatcaggga |
48375005 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 15 - 159
Target Start/End: Original strand, 26094875 - 26095019
Alignment:
| Q |
15 |
tatatttaccattactccatgtaatggatccaaacaaatcttccttcattgaggttaaagtggaggagaaaataatttggtagctcagtgttttgctatt |
114 |
Q |
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|||| |||||| | ||||| |||||| ||||||| | ||||||||| | ||| |||||| | ||||||||||||| ||| ||||| || ||||||| | |
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| T |
26094875 |
tatacttaccacttctccaagtaatgaatccaaatagatcttccttgagtgatgttaaattagaggagaaaataacttgatagctttgttttttgcttct |
26094974 |
T |
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| Q |
115 |
ttctgtaaattgaagtttatctggaatcaagtcgactttcacccc |
159 |
Q |
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| T |
26094975 |
ttttgtaaattgaagcttctccggaatcaactggactttcacccc |
26095019 |
T |
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