View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16565_high_5 (Length: 442)
Name: NF16565_high_5
Description: NF16565
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16565_high_5 |
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Alignment Details
Target: chr1 (Bit Score: 383; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 1 - 428
Target Start/End: Original strand, 36453699 - 36454126
Alignment:
| Q |
1 |
acgttgtagggaaaaattagaaaatgagctcgcatttaaattagttgagaaaacaatcttacagtaatggttatgagttgacaacaaatatacatatgac |
100 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
36453699 |
acgttgtagggaaaatttagaaaatgagctcgcatttaaattagttgagaaaacaatcttacagtaatggttatgagttgacaacaaatatacatgtgac |
36453798 |
T |
|
| Q |
101 |
aatttcattgatgcataaaacaaagttattaaatatgtaaatgatccataatatatgatcggtgtattgattctaaaatatcatcttatatatgttctag |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
36453799 |
aatttcattgatgcataaaacaaagttattaaatatgtaaatgatccataatatatgatcggtgtattgattctaaaatatcatcttatatacgttctag |
36453898 |
T |
|
| Q |
201 |
aaatgtgaaagacttattccttcaaatttttaacttactttaggaactaataatacnnnnnnntattggaatgaagaatcttttgaatcacattgacata |
300 |
Q |
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| T |
36453899 |
aaatgtgaaagacttattccttcaaatttttaacttactttaggaactaataatacaaaaaaatattggaatgaagaatcttttgaatcacattgacata |
36453998 |
T |
|
| Q |
301 |
cattattaactattattcgcatcataatagactcgagatggcaggaccgatcttgtcaacgacgaactttttattattttaaatttctagtttgttggtt |
400 |
Q |
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||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
36453999 |
cattattaattatttttcgcatcataatagactcgagatggcaggaccgatcttgtcaacgacgaactttttatgattttaaatttctagtttgttggtt |
36454098 |
T |
|
| Q |
401 |
gataattgtcatcgggcggtggctagtg |
428 |
Q |
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| T |
36454099 |
gataattgtcatcgggcggtggctagtg |
36454126 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 162 - 214
Target Start/End: Original strand, 18901514 - 18901566
Alignment:
| Q |
162 |
gtgtattgattctaaaatatcatcttatatatgttctagaaatgtgaaagact |
214 |
Q |
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| T |
18901514 |
gtgtattgattcacaaatatcatcttatatacattctataaatgtgagagact |
18901566 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 181 - 253
Target Start/End: Complemental strand, 25148601 - 25148529
Alignment:
| Q |
181 |
tcatcttatatatgttctagaaatgtgaaagacttattccttcaaatttttaacttactttaggaactaataa |
253 |
Q |
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|||||| ||||| ||||||| ||||| |||| | ||||||||||||| | ||||| |||| ||||||||||| |
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| T |
25148601 |
tcatctaatataagttctagcaatgtctaagaatcattccttcaaattgtcaacttcctttgggaactaataa |
25148529 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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