View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16565_high_6 (Length: 436)
Name: NF16565_high_6
Description: NF16565
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16565_high_6 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 233; Significance: 1e-128; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 5 - 249
Target Start/End: Original strand, 16003614 - 16003858
Alignment:
| Q |
5 |
gaggagcacagaaatagcggtatgactcgacttgtggaggaaaatggaaccagggtgaatatttgatcaacaacaaaggtctttaattttgagaattgga |
104 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
16003614 |
gaggaacacagaaatagcggtatgactcgacttgtggaggaaaatggaaccagggtgaatatttgatcaacaacaaaggtctttaattttgagaattgaa |
16003713 |
T |
|
| Q |
105 |
aggaaatcaatataaaatctaaaactacctctattttgtgatggatcttgcaagaacagaaccatgtttatggtggtaagagctatagaaaagcatggga |
204 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16003714 |
aggaaatcaatataaaatctaaaactacctctattttgtgatggatcttgcaagaacagaaccatgtttatggtggtaagagctatagaaaagcatggga |
16003813 |
T |
|
| Q |
205 |
aaaagacagctagagaacaaaagaagaagagggtgtttacgtttg |
249 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
16003814 |
aaaagacagctagagaataaaagaagaagagggtgtttacgtttg |
16003858 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 5 - 249
Target Start/End: Original strand, 26794994 - 26795241
Alignment:
| Q |
5 |
gaggagcacagaaatagcggtatgactcgacttgtggaggaaaatggaaccagggtgaatatttgatcaacaacaaaggtctttaattttgagaattgga |
104 |
Q |
| |
|
||||| |||| ||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26794994 |
gaggaacacataaatagcggtatgactcgacttgtggaggaaaacggaactagggtgaatatttgatcaacaacaaaggtctttaattttgagaattgga |
26795093 |
T |
|
| Q |
105 |
aggaaatcaatataaaatctaaaactacctctattttgtgatggatcttgcaagaacagaaccatgtttatggtggtaagagctatagaaaagcatggga |
204 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||| |
|
|
| T |
26795094 |
aggaaatcaatatagaatctaaaactacctctattttgtgatggatcttgcaagaacagaaccatgtttatggtggtaacagctgtagaaaagcatggga |
26795193 |
T |
|
| Q |
205 |
aaaagacagctagagaacaa---aagaagaagagggtgtttacgtttg |
249 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
26795194 |
aaaagacagctagagaacaaaagaagaagaagagggtgtttacgtttg |
26795241 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 247 - 422
Target Start/End: Original strand, 16004408 - 16004581
Alignment:
| Q |
247 |
ttgcagacactttccttctcttatgtgcgcagtttgtagaaaggtttgttaagaagaaatgttannnnnnnnnnnnnnngaaaggaaaaagaagaagaca |
346 |
Q |
| |
|
||||||||||||| ||||| |||||||| ||||||||||||||||||| ||||||| |||||| ||||||||||||||||||||| |
|
|
| T |
16004408 |
ttgcagacacttttcttcttttatgtgc--agtttgtagaaaggtttgtcaagaagacatgttattttttaatttttttgaaaggaaaaagaagaagaca |
16004505 |
T |
|
| Q |
347 |
ttttatgctatgtacttatgttgcgtacatgaaaattcttatacatcaatattacaataaagcatcatgcatatat |
422 |
Q |
| |
|
||||||| ||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16004506 |
ttttatgttatgtacttatgttgtgtacatgaaaatttttatacatcaatattacaataaagcatcatgcatatat |
16004581 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 15 - 249
Target Start/End: Original strand, 40721968 - 40722202
Alignment:
| Q |
15 |
gaaatagcggtatgactcgacttgtggaggaaaatggaaccagggtgaatatttgatcaacaacaaaggtctttaattttgagaattggaaggaaatcaa |
114 |
Q |
| |
|
||||||||||||||||||||||||| | |||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40721968 |
gaaatagcggtatgactcgacttgtcgtggaaaacgaaaccagggtgaatatttgatcaacaacaaaggtctttaattttgagaattggaaggaaatcaa |
40722067 |
T |
|
| Q |
115 |
tataaaatctaaaactacctctattttgtgatggatcttgcaagaacagaaccatgtttatggtggtaagagctatagaaaagcatgggaaaaagacagc |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40722068 |
tataaaatctaaaactacctctattttgtgatggatcttgcaagaacataaccatgtttatggtggtaagagctatagaaaagcatgggaaaaagacagc |
40722167 |
T |
|
| Q |
215 |
tagagaacaaaagaagaagagggtgtttacgtttg |
249 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
40722168 |
tagagaacaaaagaagaagagggtgtttacgtttg |
40722202 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 164; Significance: 2e-87; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 66 - 249
Target Start/End: Complemental strand, 27222063 - 27221880
Alignment:
| Q |
66 |
tttgatcaacaacaaaggtctttaattttgagaattggaaggaaatcaatataaaatctaaaactacctctattttgtgatggatcttgcaagaacagaa |
165 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27222063 |
tttgatcaacaacaaaggtctttaattttgagaattggaaggaaatcaatatagaatctaaaactacctctattttgtgatggatcttgcaagaacagaa |
27221964 |
T |
|
| Q |
166 |
ccatgtttatggtggtaagagctatagaaaagcatgggaaaaagacagctagagaacaaaagaagaagagggtgtttacgtttg |
249 |
Q |
| |
|
|||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
27221963 |
ccatatttatggtggtaagagctgcagaaaagcatgggaaaaagacagctagagaacaaaagaagaagaggttgtttacgtttg |
27221880 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 12 - 65
Target Start/End: Complemental strand, 27222875 - 27222822
Alignment:
| Q |
12 |
acagaaatagcggtatgactcgacttgtggaggaaaatggaaccagggtgaata |
65 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
27222875 |
acagaaatagcagtatgactcgacttgtggaggaaaacggaaccagggtgaata |
27222822 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University