View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16565_low_1 (Length: 810)
Name: NF16565_low_1
Description: NF16565
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16565_low_1 |
 | |
|
| [»] chr1 (2 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 762; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 762; E-Value: 0
Query Start/End: Original strand, 1 - 810
Target Start/End: Original strand, 3698058 - 3698867
Alignment:
| Q |
1 |
ttcacagagaaggctatgggtgaaggatcgttcaggagcatggtgggatgaatgtaataaagaagattttcctgaagatgagtttaagaaagcttttaga |
100 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
3698058 |
ttcacagagaaggctttgggtgaaggatcgttcaggagcatggtgggatgaatgtaacaaagaagattttcctgaagatgagtttaagaaagcatttaga |
3698157 |
T |
|
| Q |
101 |
atgggaaaatcaacttttgatttgatttgtgaagaactgaattcagcaattgtgaaagaagatacaactttgagaactgcaattccagtgagacaaagag |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3698158 |
atgggaaaatcaacttttgatttgatttgtgaagaattgaattcagcaattgtgaaagaagatacaactttgagaactgcaattccagtgagacaaagag |
3698257 |
T |
|
| Q |
201 |
tagctgtttgtctatggagactagcaacaggtgatcctcttagcattgtttcaaaaaggtttggtttaggtatatcaacttgtcataaacttgttcttga |
300 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3698258 |
tagctgtttgtctatggagattagcaacaggtgatcctcttagaattgtttcaaaaaggtttggtttaggtatatcaacttgtcataaacttgttcttga |
3698357 |
T |
|
| Q |
301 |
agtttgcactgctattaaaactgttcttatgcctaagtatcttcaatggcctaatgaaacttctttgagaaaaactaaaaatgagtttgagggtatgtca |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
3698358 |
agtttgcactgctattaaaactgttcttatgcctaagtatcttcaatggcctaatgaaacttctttgagaaaaattaaaaatgagtttgagggtatgtca |
3698457 |
T |
|
| Q |
401 |
ggtattccaaatgttgtagggtccatgtatacatcacatgttccaattatagctcctaagattagtgttgctgattattttaacaagagacatactgaga |
500 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
3698458 |
ggtattccaaatgttgtagggtccatgtatacatcacatgttccaattatagctcctaagattagtgttgctgcttattttaacaagagacatactgaga |
3698557 |
T |
|
| Q |
501 |
ggaatcaaaagacttcatattcaataactgttcaaggagttgttgatacaaatggtgttttcactgatgtttgtattggttggcctggttcaatgcctga |
600 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
3698558 |
ggaatcaaaagacttcatattcaataactgttcaaggagttgttgatacaaatggtgttttcactgatgtttgcattggttggcctggttcaatgcctga |
3698657 |
T |
|
| Q |
601 |
tgatcaagtgttagaaaaatcagcactttttcaaagggctaataatggaggacttctcagaggtgtttggattgttggtagttcagggtatcctttaatg |
700 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
3698658 |
tgatcaagtgttagaaaaatcagcactttttcaaagggctaataatggaggacttcttaaaggtgtttggattgttggaagttcagggtatcctttaatg |
3698757 |
T |
|
| Q |
701 |
gattgggttttagtaccttatactcaacaaaatcttacttggacacaacatggtttcaatgagaagattggtgagatacaaaaagttgctaaagatgcat |
800 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3698758 |
gattgggttttagtaccttatactcaacaaaatcttacttggacacaacatggtttcaatgagaagattggtgagatacaaaaagttgctaaagatgcat |
3698857 |
T |
|
| Q |
801 |
ttgctagatt |
810 |
Q |
| |
|
|||||||||| |
|
|
| T |
3698858 |
ttgctagatt |
3698867 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 758; E-Value: 0
Query Start/End: Original strand, 1 - 810
Target Start/End: Original strand, 3701746 - 3702555
Alignment:
| Q |
1 |
ttcacagagaaggctatgggtgaaggatcgttcaggagcatggtgggatgaatgtaataaagaagattttcctgaagatgagtttaagaaagcttttaga |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3701746 |
ttcacagagaaggctatgggtgaaggatcgttccggggcatggtgggatgaatgtaataaagaagattttcctgaagatgagtttaagaaagcttttaga |
3701845 |
T |
|
| Q |
101 |
atgggaaaatcaacttttgatttgatttgtgaagaactgaattcagcaattgtgaaagaagatacaactttgagaactgcaattccagtgagacaaagag |
200 |
Q |
| |
|
||||||||||||||||||||||| ||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3701846 |
atgggaaaatcaacttttgattttatttgtgaaaaattgaattcagcaattgtgaaagaagatacaactttgagaactgcaattccagtgagacaaagag |
3701945 |
T |
|
| Q |
201 |
tagctgtttgtctatggagactagcaacaggtgatcctcttagcattgtttcaaaaaggtttggtttaggtatatcaacttgtcataaacttgttcttga |
300 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3701946 |
tagctgtttgtctatggagattagcaacaggtgatcctcttagcattgtttcaaaaaggtttggtttaggtatatcaacttgtcataaacttgttcttga |
3702045 |
T |
|
| Q |
301 |
agtttgcactgctattaaaactgttcttatgcctaagtatcttcaatggcctaatgaaacttctttgagaaaaactaaaaatgagtttgagggtatgtca |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||| |
|
|
| T |
3702046 |
agtttgcactgctattaaaactgttcttatgcctaagtatcttcaatggcctaatgaaacttctttgagaaaaattaagaatgagtttgagggtatgtca |
3702145 |
T |
|
| Q |
401 |
ggtattccaaatgttgtagggtccatgtatacatcacatgttccaattatagctcctaagattagtgttgctgattattttaacaagagacatactgaga |
500 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
3702146 |
ggtattccaaatgttgtagggtccatgtatacatcacatgttccaatcatagctcctaagattagtgttgctgattattttaacagaagacatactgaga |
3702245 |
T |
|
| Q |
501 |
ggaatcaaaagacttcatattcaataactgttcaaggagttgttgatacaaatggtgttttcactgatgtttgtattggttggcctggttcaatgcctga |
600 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3702246 |
ggaatcaaaagacttcatattcaataactgttcaaggtgttgttgatacaaatggtgttttcactgatgtttgtattggttggcctggttcaatgcctga |
3702345 |
T |
|
| Q |
601 |
tgatcaagtgttagaaaaatcagcactttttcaaagggctaataatggaggacttctcagaggtgtttggattgttggtagttcagggtatcctttaatg |
700 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3702346 |
tgatcaagtgttagaaaaatcagcactttttcaaagggctaataatggaggacttctcagaggtgtttggattgttggtagttcagggtatcctttaatg |
3702445 |
T |
|
| Q |
701 |
gattgggttttagtaccttatactcaacaaaatcttacttggacacaacatggtttcaatgagaagattggtgagatacaaaaagttgctaaagatgcat |
800 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3702446 |
gattgggttttagtaccttatactcaacaaaatcttacttggacacaacatggtttcaatgaaaagattggtgagatacaaaaagttgctaaagatgcat |
3702545 |
T |
|
| Q |
801 |
ttgctagatt |
810 |
Q |
| |
|
|||||||||| |
|
|
| T |
3702546 |
ttgctagatt |
3702555 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 206 - 306
Target Start/End: Complemental strand, 52251470 - 52251370
Alignment:
| Q |
206 |
gtttgtctatggagactagcaacaggtgatcctcttagcattgtttcaaaaaggtttggtttaggtatatcaacttgtcataaacttgttcttgaagttt |
305 |
Q |
| |
|
|||||| | |||||||| || || ||||||||||| || | |||||||| ||||| ||||| |||||||| || |||||||| || |||||||| |||| |
|
|
| T |
52251470 |
gtttgtatctggagactcgccaccggtgatcctctaaggctggtttcaaagaggttcggtttgggtatatccacctgtcataagctggttcttgaggttt |
52251371 |
T |
|
| Q |
306 |
g |
306 |
Q |
| |
|
| |
|
|
| T |
52251370 |
g |
52251370 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000005; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 698 - 774
Target Start/End: Original strand, 17602680 - 17602756
Alignment:
| Q |
698 |
atggattgggttttagtaccttatactcaacaaaatcttacttggacacaacatggtttcaatgagaagattggtga |
774 |
Q |
| |
|
||||||||||||||||| || |||| || |||||||| || |||||||||||||| || ||||||| |||||||| |
|
|
| T |
17602680 |
atggattgggttttagtgccatataagcaccaaaatctgacgtggacacaacatggatttaatgagagaattggtga |
17602756 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 518 - 596
Target Start/End: Original strand, 17602503 - 17602581
Alignment:
| Q |
518 |
tattcaataactgttcaaggagttgttgatacaaatggtgttttcactgatgtttgtattggttggcctggttcaatgc |
596 |
Q |
| |
|
|||||| ||||||||||||| || || ||| || |||||||| |||||||| ||||| ||||||||||| ||||||| |
|
|
| T |
17602503 |
tattcagtaactgttcaaggtgtggtaaatagtaaaggtgtttttactgatgtgtgtataggttggcctggctcaatgc |
17602581 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University